Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0898.Seq
         (339 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              104   2e-23
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               61   3e-10

>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  104 bits (249), Expect = 2e-23
 Identities = 48/65 (73%), Positives = 55/65 (84%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K + AFVP DGC N+IEE   VL++ FGR+G AVGDIPGVRFKVVKVANVSLLAL+K +K
Sbjct: 79  KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKK 138

Query: 49  ERPRS 35
           ERPRS
Sbjct: 139 ERPRS 143



 Score = 29.1 bits (62), Expect = 0.96
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -1

Query: 306 EKVGVXAXQPNSAIRIMLRVQXI 238
           ++ GV A QPNSAIR  +RVQ I
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLI 75


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 25/40 (62%), Positives = 31/40 (77%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGV 110
           K + AFVP DGC N+IEE   VL++ FGR+G AVGDIPG+
Sbjct: 78  KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 27/34 (79%), Positives = 28/34 (82%)
 Frame = -1

Query: 339 GGASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           GGASHAKG VLEKVGV A QPNSAIR  +RVQ I
Sbjct: 41  GGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,087,907
Number of Sequences: 59808
Number of extensions: 108912
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)