Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0898.Seq
         (339 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   107   9e-24
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               107   9e-24
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   107   9e-24
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...   101   4e-22

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  107 bits (257), Expect = 9e-24
 Identities = 52/65 (80%), Positives = 54/65 (83%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K + AFVP DGC N IEE   VLVA FGRKG AVGDIPGVRFKVVKVANVSLLALYK +K
Sbjct: 79  KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138

Query: 49  ERPRS 35
           ERPRS
Sbjct: 139 ERPRS 143



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 27/34 (79%), Positives = 28/34 (82%)
 Frame = -1

Query: 339 GGASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           GGASHAKG VLEKVGV A QPNSAIR  +RVQ I
Sbjct: 42  GGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  107 bits (257), Expect = 9e-24
 Identities = 52/65 (80%), Positives = 54/65 (83%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K + AFVP DGC N IEE   VLVA FGRKG AVGDIPGVRFKVVKVANVSLLALYK +K
Sbjct: 79  KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138

Query: 49  ERPRS 35
           ERPRS
Sbjct: 139 ERPRS 143



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 27/34 (79%), Positives = 28/34 (82%)
 Frame = -1

Query: 339 GGASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           GGASHAKG VLEKVGV A QPNSAIR  +RVQ I
Sbjct: 42  GGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  107 bits (257), Expect = 9e-24
 Identities = 52/65 (80%), Positives = 54/65 (83%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K + AFVP DGC N IEE   VLVA FGRKG AVGDIPGVRFKVVKVANVSLLALYK +K
Sbjct: 79  KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138

Query: 49  ERPRS 35
           ERPRS
Sbjct: 139 ERPRS 143



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 27/34 (79%), Positives = 28/34 (82%)
 Frame = -1

Query: 339 GGASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           GGASHAKG VLEKVGV A QPNSAIR  +RVQ I
Sbjct: 42  GGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score =  101 bits (243), Expect = 4e-22
 Identities = 49/59 (83%), Positives = 50/59 (84%)
 Frame = -3

Query: 214 FVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRKERPR 38
           FVP DGC N IEE   VLVA FGRKG AVGDIPGVRFKVVKVANVSLLALYK +KERPR
Sbjct: 1   FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,938,364
Number of Sequences: 237096
Number of extensions: 495441
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1852524224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)