Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0898.Seq
         (339 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089523-1|AAL90261.1|  143|Drosophila melanogaster GM14585p pro...   106   6e-24
AE013599-1845|AAF58277.2|  143|Drosophila melanogaster CG8415-PA...   106   6e-24
BT016082-1|AAV36967.1|  568|Drosophila melanogaster LD47465p pro...    28   2.7  
AY070520-1|AAL47991.1|  507|Drosophila melanogaster GH23534p pro...    28   2.7  
AE014297-2300|AAX52959.1|  568|Drosophila melanogaster CG5201-PC...    28   2.7  
AE014297-2299|AAF55383.1|  568|Drosophila melanogaster CG5201-PB...    28   2.7  
AE014297-2298|AAN13728.1|  568|Drosophila melanogaster CG5201-PA...    28   2.7  
AB004232-1|BAA22841.1|  568|Drosophila melanogaster DAD polypept...    28   2.7  

>AY089523-1|AAL90261.1|  143|Drosophila melanogaster GM14585p
           protein.
          Length = 143

 Score =  106 bits (255), Expect = 6e-24
 Identities = 52/65 (80%), Positives = 55/65 (84%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K + AFVPRDG  N+IEE   VLVA FGRKG AVGDIPGVRFKVVKVANVSLLALYK +K
Sbjct: 79  KKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 138

Query: 49  ERPRS 35
           ERPRS
Sbjct: 139 ERPRS 143



 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 27/34 (79%), Positives = 28/34 (82%)
 Frame = -1

Query: 339 GGASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           GGASHAKG VLEKVGV A QPNSAIR  +RVQ I
Sbjct: 42  GGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75


>AE013599-1845|AAF58277.2|  143|Drosophila melanogaster CG8415-PA
           protein.
          Length = 143

 Score =  106 bits (255), Expect = 6e-24
 Identities = 52/65 (80%), Positives = 55/65 (84%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K + AFVPRDG  N+IEE   VLVA FGRKG AVGDIPGVRFKVVKVANVSLLALYK +K
Sbjct: 79  KKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 138

Query: 49  ERPRS 35
           ERPRS
Sbjct: 139 ERPRS 143



 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 27/34 (79%), Positives = 28/34 (82%)
 Frame = -1

Query: 339 GGASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           GGASHAKG VLEKVGV A QPNSAIR  +RVQ I
Sbjct: 42  GGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75


>BT016082-1|AAV36967.1|  568|Drosophila melanogaster LD47465p
           protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 20  HNVHL*SWSLLSLFVESEERHVGYFYHLKTNSGNV-TDG 133
           HN++   W  ++ + E   R VG F+H KTN+ N+ TDG
Sbjct: 393 HNINSQVWCQIAYW-EMAHR-VGEFFHAKTNAVNIYTDG 429


>AY070520-1|AAL47991.1|  507|Drosophila melanogaster GH23534p
           protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 20  HNVHL*SWSLLSLFVESEERHVGYFYHLKTNSGNV-TDG 133
           HN++   W  ++ + E   R VG F+H KTN+ N+ TDG
Sbjct: 332 HNINSQVWCQIAYW-EMAHR-VGEFFHAKTNAVNIYTDG 368


>AE014297-2300|AAX52959.1|  568|Drosophila melanogaster CG5201-PC,
           isoform C protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 20  HNVHL*SWSLLSLFVESEERHVGYFYHLKTNSGNV-TDG 133
           HN++   W  ++ + E   R VG F+H KTN+ N+ TDG
Sbjct: 393 HNINSQVWCQIAYW-EMAHR-VGEFFHAKTNAVNIYTDG 429


>AE014297-2299|AAF55383.1|  568|Drosophila melanogaster CG5201-PB,
           isoform B protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 20  HNVHL*SWSLLSLFVESEERHVGYFYHLKTNSGNV-TDG 133
           HN++   W  ++ + E   R VG F+H KTN+ N+ TDG
Sbjct: 393 HNINSQVWCQIAYW-EMAHR-VGEFFHAKTNAVNIYTDG 429


>AE014297-2298|AAN13728.1|  568|Drosophila melanogaster CG5201-PA,
           isoform A protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 20  HNVHL*SWSLLSLFVESEERHVGYFYHLKTNSGNV-TDG 133
           HN++   W  ++ + E   R VG F+H KTN+ N+ TDG
Sbjct: 393 HNINSQVWCQIAYW-EMAHR-VGEFFHAKTNAVNIYTDG 429


>AB004232-1|BAA22841.1|  568|Drosophila melanogaster DAD polypeptide
           protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 20  HNVHL*SWSLLSLFVESEERHVGYFYHLKTNSGNV-TDG 133
           HN++   W  ++ + E   R VG F+H KTN+ N+ TDG
Sbjct: 393 HNINSQVWCQIAYW-EMAHR-VGEFFHAKTNAVNIYTDG 429


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471,283
Number of Sequences: 53049
Number of extensions: 154633
Number of successful extensions: 274
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 777358641
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)