Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0898.Seq
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   100   5e-22
AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical...    27   2.6  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    27   4.5  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 45/65 (69%), Positives = 52/65 (80%)
 Frame = -3

Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50
           K + AFVP DGC N +EE   VLV+ FGR G AVGDIPGVRFK+VKVAN SL+AL+K +K
Sbjct: 79  KKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKK 138

Query: 49  ERPRS 35
           ERPRS
Sbjct: 139 ERPRS 143



 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 26/34 (76%), Positives = 28/34 (82%)
 Frame = -1

Query: 339 GGASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238
           GGASHAKG VLEK+GV A QPNSAIR  +RVQ I
Sbjct: 42  GGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLI 75


>AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical
           protein Y18D10A.23 protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 2   DSKVTYHNVHL*SWSLLSLFVESEERHVG 88
           DS  TYHN H  SW + ++F+  +    G
Sbjct: 28  DSSSTYHNSHGISWLMAAVFIVGDMMGAG 56


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 105 KRTPGMSPTAXPLRPNXATSTXXXSSMWFXQPSRG 209
           K+T G +PTA P   +  T+T   +S    +PS G
Sbjct: 490 KKTYGYAPTAAPTNNSRGTNTWRSTSPSAVEPSGG 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,705,698
Number of Sequences: 27780
Number of extensions: 74775
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)