Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0898.Seq
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 139 GXAVGDIPGVR 107
           G AVGD+PG+R
Sbjct: 42  GSAVGDVPGLR 52


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 19  SQCTPMILVAPFSXCRERGETRWL 90
           + C   ++V PFS   E  E RWL
Sbjct: 90  ADCLVGLVVMPFSAIYEVLENRWL 113


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 139 GXAVGDIPGVRFKVVKVANVSLL 71
           G  V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90



 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 108  RTPGMSPTAXPLRPNXAT 161
            + PG+ P A  L PN  T
Sbjct: 1497 QAPGIPPAATFLSPNSTT 1514


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 139 GXAVGDIPGVRFKVVKVANVSLL 71
           G  V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90



 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 108  RTPGMSPTAXPLRPNXAT 161
            + PG+ P A  L PN  T
Sbjct: 1493 QAPGIPPAATFLSPNSTT 1510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,098
Number of Sequences: 438
Number of extensions: 858
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)