BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0898.Seq (339 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 101 9e-23 At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 101 9e-23 At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containi... 27 4.2 At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi... 27 4.2 At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi... 27 4.2 >At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribosomal protein S23, Fragaria x ananassa, PIR:S56673 Length = 142 Score = 101 bits (243), Expect = 9e-23 Identities = 47/65 (72%), Positives = 54/65 (83%) Frame = -3 Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50 K + AFVP DGC N+IEE VL+A FGRKG AVGDIPGVRFKVVKV+ VSLLAL+K +K Sbjct: 78 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137 Query: 49 ERPRS 35 E+PRS Sbjct: 138 EKPRS 142 Score = 49.2 bits (112), Expect = 7e-07 Identities = 23/33 (69%), Positives = 26/33 (78%) Frame = -1 Query: 336 GASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238 G+SHAKG VLEK+G+ A QPNSAIR RVQ I Sbjct: 42 GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLI 74 >At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar to 40S ribosomal protein S23 (S12) GB:P46297 from [Fragaria x ananassa] Length = 142 Score = 101 bits (243), Expect = 9e-23 Identities = 47/65 (72%), Positives = 54/65 (83%) Frame = -3 Query: 229 KXVXAFVPRDGCXNHIEEXXXVLVAXFGRKGXAVGDIPGVRFKVVKVANVSLLALYKXRK 50 K + AFVP DGC N+IEE VL+A FGRKG AVGDIPGVRFKVVKV+ VSLLAL+K +K Sbjct: 78 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137 Query: 49 ERPRS 35 E+PRS Sbjct: 138 EKPRS 142 Score = 46.8 bits (106), Expect = 4e-06 Identities = 22/32 (68%), Positives = 25/32 (78%) Frame = -1 Query: 333 ASHAKGXVLEKVGVXAXQPNSAIRIMLRVQXI 238 +SHAKG VLEK+G+ A QPNSAIR RVQ I Sbjct: 43 SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLI 74 >At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containing protein low similarity to post-transcriptional control of chloroplast gene expression CRP1 [Zea mays] GI:3289002; contains Pfam profile PF01535: PPR repeat Length = 855 Score = 26.6 bits (56), Expect = 4.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 83 VGYFYHLKTNSGNVTDGXTFTT 148 +G+FY LK G DG T+TT Sbjct: 343 LGFFYWLKRQPGFKHDGHTYTT 364 >At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing protein low similarity to 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana] GI:9755842; contains Pfam profile PF01535: PPR repeat Length = 860 Score = 26.6 bits (56), Expect = 4.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 83 VGYFYHLKTNSGNVTDGXTFTT 148 +G+FY LK G DG T+TT Sbjct: 348 LGFFYWLKRQPGFKHDGHTYTT 369 >At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing protein low similarity to 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana] GI:9755842; contains Pfam profile PF01535: PPR repeat Length = 860 Score = 26.6 bits (56), Expect = 4.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 83 VGYFYHLKTNSGNVTDGXTFTT 148 +G+FY LK G DG T+TT Sbjct: 348 LGFFYWLKRQPGFKHDGHTYTT 369 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,445,635 Number of Sequences: 28952 Number of extensions: 70664 Number of successful extensions: 101 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 101 length of database: 12,070,560 effective HSP length: 72 effective length of database: 9,986,016 effective search space used: 399440640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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