Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0897.Seq
         (399 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9UPZ6 Cluster: Thrombospondin type-1 domain-containing...    33   2.7  
UniRef50_Q8MY75 Cluster: Pf1-cadherin; n=1; Ptychodera flava|Rep...    32   4.8  
UniRef50_Q54ZP6 Cluster: Putative uncharacterized protein; n=2; ...    31   8.3  

>UniRef50_Q9UPZ6 Cluster: Thrombospondin type-1 domain-containing
            protein 7A precursor; n=29; Euteleostomi|Rep:
            Thrombospondin type-1 domain-containing protein 7A
            precursor - Homo sapiens (Human)
          Length = 1657

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 107  VKNENKSID-KYCALLFCLRNWDLNLNVSAEC 15
            V+++ KS+D KYC  L   +NW +N +   EC
Sbjct: 1252 VRSDGKSVDLKYCEALGLEKNWQMNTSCMVEC 1283


>UniRef50_Q8MY75 Cluster: Pf1-cadherin; n=1; Ptychodera flava|Rep:
            Pf1-cadherin - Ptychodera flava
          Length = 1959

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 244  AVTVHQLMPDGX-AFCACVTVQAAAVIASXXLSPRMPXTLDSCWSGGASAD 393
            A+T   ++ DG   F +  T+Q A  +    L+PR P   + C +GG   D
Sbjct: 1225 AITDPTIIDDGADTFVSVTTIQRAECVCGAKLAPRGPCASNPCLNGGQCID 1275


>UniRef50_Q54ZP6 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 732

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 25  DTFKFKSQFRRQNSNAQYLSIDLFSFL 105
           D  K KS F+R+  N  YLS++L+ FL
Sbjct: 509 DVIKAKSTFKRKQPNQPYLSVELWYFL 535


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 328,368,191
Number of Sequences: 1657284
Number of extensions: 5419469
Number of successful extensions: 13614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13613
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)