Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0897.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   3.4  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   3.4  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    21   4.5  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 128 IGNAKLLVKNENKSIDKYCALLFCL 54
           I +  LL+K  ++ +  +C+L FC+
Sbjct: 237 IFSVPLLMKIASQFVGIFCSLYFCI 261


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 128 IGNAKLLVKNENKSIDKYCALLFCL 54
           I +  LL+K  ++ +  +C+L FC+
Sbjct: 62  IFSVPLLMKIASQFVGIFCSLYFCI 86


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
          acetylcholinesterase protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 47 WDLNLNVSAECSY 9
          W+ N N+S +C Y
Sbjct: 3  WNPNTNISEDCLY 15


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,828
Number of Sequences: 336
Number of extensions: 1394
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)