Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0897.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0292 + 22846273-22846377,22847161-22847823                       29   1.4  
05_03_0575 - 15643819-15644295                                         27   7.2  
07_01_1115 - 10297763-10298103,10298396-10298441,10299077-102991...    26   9.5  
01_02_0045 - 10576475-10577198,10578347-10578504                       26   9.5  

>03_05_0292 + 22846273-22846377,22847161-22847823
          Length = 255

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = +1

Query: 208 GKGRRHGGEAGRAVTVHQLMPDGXAFCACVTVQAAAVIASXXLSPRMPXTLDSCWSGGAS 387
           G G RHGGEA       +L PD     A +   AA V A+     R    L     GG +
Sbjct: 88  GGGGRHGGEAATGAEARRL-PDVRGAAAVLAEVAALVEAAAGAEARRLSDLRGGGGGGGA 146

Query: 388 ADR 396
             R
Sbjct: 147 RGR 149


>05_03_0575 - 15643819-15644295
          Length = 158

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 199 TTSGKGRRHGGEAGRAVTVHQLMPDGXAFCACVTVQA 309
           T +G+  R GG  GRA   H+  P     C C   QA
Sbjct: 4   TAAGRVERGGGRGGRACG-HRSHPSPPTLCPCPLRQA 39


>07_01_1115 -
           10297763-10298103,10298396-10298441,10299077-10299101,
           10299663-10299718,10299818-10299925
          Length = 191

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 110 LVKNENKSIDKYCALLFCLRNWDLNLNVSAEC 15
           LV+N +    K+C  LFC      +L +  +C
Sbjct: 145 LVQNHHDQTLKFCTTLFCAEKHFFSLQILCKC 176


>01_02_0045 - 10576475-10577198,10578347-10578504
          Length = 293

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 193 SCTTSGKGRRHGGEAGRA 246
           S +T+G GR HGG AGR+
Sbjct: 257 SSSTAGGGRVHGGLAGRS 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,195,246
Number of Sequences: 37544
Number of extensions: 158723
Number of successful extensions: 439
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)