Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0897.Seq
         (399 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023177-1|BAA76804.2| 1502|Homo sapiens KIAA0960 protein protein.     33   0.46 
Y00414-1|CAA68472.1|  524|Homo sapiens protein ( Human mRNA for ...    28   9.9  
X05290-1|CAA28908.1|  497|Homo sapiens protein ( Human mRNA for ...    28   9.9  
M17589-1|AAA61179.1|  528|Homo sapiens TH protein.                     28   9.9  
BC104967-1|AAI04968.1|  497|Homo sapiens tyrosine hydroxylase pr...    28   9.9  

>AB023177-1|BAA76804.2| 1502|Homo sapiens KIAA0960 protein protein.
          Length = 1502

 Score = 32.7 bits (71), Expect = 0.46
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 107  VKNENKSID-KYCALLFCLRNWDLNLNVSAEC 15
            V+++ KS+D KYC  L   +NW +N +   EC
Sbjct: 1097 VRSDGKSVDLKYCEALGLEKNWQMNTSCMVEC 1128


>Y00414-1|CAA68472.1|  524|Homo sapiens protein ( Human mRNA for
           tyrosine hydroxylase type 3. ).
          Length = 524

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -2

Query: 257 CTVTARPASPPCRRPFPLVVHDLRLKSIPMTTHKIFA*YYRT*IGNAKLLVKNE 96
           CT   R AS P   P P   H+L L  +PM   + FA + +  IG A L   +E
Sbjct: 337 CTQYIRHASSPMHSPEPDCCHEL-LGHVPMLADRTFAQFSQD-IGLASLGASDE 388


>X05290-1|CAA28908.1|  497|Homo sapiens protein ( Human mRNA for
           tyrosine hydroxylase (HTH-1). ).
          Length = 497

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -2

Query: 257 CTVTARPASPPCRRPFPLVVHDLRLKSIPMTTHKIFA*YYRT*IGNAKLLVKNE 96
           CT   R AS P   P P   H+L L  +PM   + FA + +  IG A L   +E
Sbjct: 310 CTQYIRHASSPMHSPEPDCCHEL-LGHVPMLADRTFAQFSQD-IGLASLGASDE 361


>M17589-1|AAA61179.1|  528|Homo sapiens TH protein.
          Length = 528

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -2

Query: 257 CTVTARPASPPCRRPFPLVVHDLRLKSIPMTTHKIFA*YYRT*IGNAKLLVKNE 96
           CT   R AS P   P P   H+L L  +PM   + FA + +  IG A L   +E
Sbjct: 341 CTQYIRHASSPMHSPEPDCCHEL-LGHVPMLADRTFAQFSQD-IGLASLGASDE 392


>BC104967-1|AAI04968.1|  497|Homo sapiens tyrosine hydroxylase
           protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -2

Query: 257 CTVTARPASPPCRRPFPLVVHDLRLKSIPMTTHKIFA*YYRT*IGNAKLLVKNE 96
           CT   R AS P   P P   H+L L  +PM   + FA + +  IG A L   +E
Sbjct: 310 CTQYIRHASSPMHSPEPDCCHEL-LGHVPMLADRTFAQFSQD-IGLASLGASDE 361


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,008,640
Number of Sequences: 237096
Number of extensions: 776620
Number of successful extensions: 1581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)