BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0897.Seq (399 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AB023177-1|BAA76804.2| 1502|Homo sapiens KIAA0960 protein protein. 33 0.46 Y00414-1|CAA68472.1| 524|Homo sapiens protein ( Human mRNA for ... 28 9.9 X05290-1|CAA28908.1| 497|Homo sapiens protein ( Human mRNA for ... 28 9.9 M17589-1|AAA61179.1| 528|Homo sapiens TH protein. 28 9.9 BC104967-1|AAI04968.1| 497|Homo sapiens tyrosine hydroxylase pr... 28 9.9 >AB023177-1|BAA76804.2| 1502|Homo sapiens KIAA0960 protein protein. Length = 1502 Score = 32.7 bits (71), Expect = 0.46 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -2 Query: 107 VKNENKSID-KYCALLFCLRNWDLNLNVSAEC 15 V+++ KS+D KYC L +NW +N + EC Sbjct: 1097 VRSDGKSVDLKYCEALGLEKNWQMNTSCMVEC 1128 >Y00414-1|CAA68472.1| 524|Homo sapiens protein ( Human mRNA for tyrosine hydroxylase type 3. ). Length = 524 Score = 28.3 bits (60), Expect = 9.9 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = -2 Query: 257 CTVTARPASPPCRRPFPLVVHDLRLKSIPMTTHKIFA*YYRT*IGNAKLLVKNE 96 CT R AS P P P H+L L +PM + FA + + IG A L +E Sbjct: 337 CTQYIRHASSPMHSPEPDCCHEL-LGHVPMLADRTFAQFSQD-IGLASLGASDE 388 >X05290-1|CAA28908.1| 497|Homo sapiens protein ( Human mRNA for tyrosine hydroxylase (HTH-1). ). Length = 497 Score = 28.3 bits (60), Expect = 9.9 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = -2 Query: 257 CTVTARPASPPCRRPFPLVVHDLRLKSIPMTTHKIFA*YYRT*IGNAKLLVKNE 96 CT R AS P P P H+L L +PM + FA + + IG A L +E Sbjct: 310 CTQYIRHASSPMHSPEPDCCHEL-LGHVPMLADRTFAQFSQD-IGLASLGASDE 361 >M17589-1|AAA61179.1| 528|Homo sapiens TH protein. Length = 528 Score = 28.3 bits (60), Expect = 9.9 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = -2 Query: 257 CTVTARPASPPCRRPFPLVVHDLRLKSIPMTTHKIFA*YYRT*IGNAKLLVKNE 96 CT R AS P P P H+L L +PM + FA + + IG A L +E Sbjct: 341 CTQYIRHASSPMHSPEPDCCHEL-LGHVPMLADRTFAQFSQD-IGLASLGASDE 392 >BC104967-1|AAI04968.1| 497|Homo sapiens tyrosine hydroxylase protein. Length = 497 Score = 28.3 bits (60), Expect = 9.9 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = -2 Query: 257 CTVTARPASPPCRRPFPLVVHDLRLKSIPMTTHKIFA*YYRT*IGNAKLLVKNE 96 CT R AS P P P H+L L +PM + FA + + IG A L +E Sbjct: 310 CTQYIRHASSPMHSPEPDCCHEL-LGHVPMLADRTFAQFSQD-IGLASLGASDE 361 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 47,008,640 Number of Sequences: 237096 Number of extensions: 776620 Number of successful extensions: 1581 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1571 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1581 length of database: 76,859,062 effective HSP length: 82 effective length of database: 57,417,190 effective search space used: 2870859500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -