Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0897.Seq
         (399 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D17389-4|BAA04212.1| 5112|Drosophila melanogaster ryanodine rece...    29   3.0  
D17389-3|BAA41471.1| 5112|Drosophila melanogaster ryanodine rece...    29   3.0  
D17389-2|BAA41470.1| 5126|Drosophila melanogaster ryanodine rece...    29   3.0  
D17389-1|BAA41469.1| 5126|Drosophila melanogaster ryanodine rece...    29   3.0  

>D17389-4|BAA04212.1| 5112|Drosophila melanogaster ryanodine receptor
            homologue protein.
          Length = 5112

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 187  LRSCTTSGKGRRHGGEAGRAVT 252
            LR C  S  GRR+GG +GR  T
Sbjct: 1050 LRICLGSSDGRRNGGTSGRGTT 1071


>D17389-3|BAA41471.1| 5112|Drosophila melanogaster ryanodine receptor
            homologue protein.
          Length = 5112

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 187  LRSCTTSGKGRRHGGEAGRAVT 252
            LR C  S  GRR+GG +GR  T
Sbjct: 1050 LRICLGSSDGRRNGGTSGRGTT 1071


>D17389-2|BAA41470.1| 5126|Drosophila melanogaster ryanodine receptor
            homologue protein.
          Length = 5126

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 187  LRSCTTSGKGRRHGGEAGRAVT 252
            LR C  S  GRR+GG +GR  T
Sbjct: 1050 LRICLGSSDGRRNGGTSGRGTT 1071


>D17389-1|BAA41469.1| 5126|Drosophila melanogaster ryanodine receptor
            homologue protein.
          Length = 5126

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 187  LRSCTTSGKGRRHGGEAGRAVT 252
            LR C  S  GRR+GG +GR  T
Sbjct: 1050 LRICLGSSDGRRNGGTSGRGTT 1071


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,034,674
Number of Sequences: 53049
Number of extensions: 251807
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)