Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0897.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily ass...    30   0.70 
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    30   0.70 
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     30   0.70 
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     30   0.70 
U38378-1|AAA79751.1|  418|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U00046-2|AAN65304.1|  860|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform c protein.
          Length = 860

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 291 STERRTVGHQLMYGHSATRLASVPTTLPTSSARS*TQVYTYDYPQNIRL 145
           S  R    +  M GH   R  SV    PTSS  S T  +TY+Y   +R+
Sbjct: 218 SRSRNLQENTTMQGHLVAR-KSVTIMTPTSSEPSITSSFTYEYDDMLRV 265


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 291  STERRTVGHQLMYGHSATRLASVPTTLPTSSARS*TQVYTYDYPQNIRL 145
            S  R    +  M GH   R  SV    PTSS  S T  +TY+Y   +R+
Sbjct: 1889 SRSRNLQENTTMQGHLVAR-KSVTIMTPTSSEPSITSSFTYEYDDMLRV 1936


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 291  STERRTVGHQLMYGHSATRLASVPTTLPTSSARS*TQVYTYDYPQNIRL 145
            S  R    +  M GH   R  SV    PTSS  S T  +TY+Y   +R+
Sbjct: 1831 SRSRNLQENTTMQGHLVAR-KSVTIMTPTSSEPSITSSFTYEYDDMLRV 1878


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 291  STERRTVGHQLMYGHSATRLASVPTTLPTSSARS*TQVYTYDYPQNIRL 145
            S  R    +  M GH   R  SV    PTSS  S T  +TY+Y   +R+
Sbjct: 2013 SRSRNLQENTTMQGHLVAR-KSVTIMTPTSSEPSITSSFTYEYDDMLRV 2060


>U38378-1|AAA79751.1|  418|Caenorhabditis elegans Hypothetical
           protein R11F4.3 protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 254 TVTARPASPPCRRPFPLVVHDLRLKSIP 171
           T T  P  PP R P P++  ++R   +P
Sbjct: 177 TTTTPPPPPPTRAPRPIIPTEVRRPQMP 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,518,960
Number of Sequences: 27780
Number of extensions: 126213
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)