BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0897.Seq (399 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 1.3 AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 21 5.2 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 5.2 AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 21 5.2 AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 21 5.2 AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 21 6.9 Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 20 9.1 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 20 9.1 >DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine receptor alpha3subunit protein. Length = 566 Score = 23.0 bits (47), Expect = 1.3 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -3 Query: 319 LLPRPEL*RKHRTPXRRASADVRSQ 245 +LPR + R++ TP +R+ D R Q Sbjct: 348 VLPRLLVMRRYNTPSKRSDYDSRPQ 372 >AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. Length = 349 Score = 21.0 bits (42), Expect = 5.2 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -2 Query: 89 SIDKYCALLFCLRNWDLNLNVSAECSY-WI 3 S+D+Y A++ L+ WD++ S+ WI Sbjct: 133 SMDRYYAVIKPLQLWDVDKRGKIMLSFAWI 162 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 21.0 bits (42), Expect = 5.2 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = -3 Query: 190 LDSSLYL*LPTKYSLDI 140 +DS+L++ P K SLD+ Sbjct: 995 IDSNLHVYAPLKISLDV 1011 >AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase protein. Length = 492 Score = 21.0 bits (42), Expect = 5.2 Identities = 6/13 (46%), Positives = 9/13 (69%) Frame = -2 Query: 47 WDLNLNVSAECSY 9 W+ N N+S +C Y Sbjct: 116 WNPNTNISEDCLY 128 >AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase protein. Length = 628 Score = 21.0 bits (42), Expect = 5.2 Identities = 6/13 (46%), Positives = 9/13 (69%) Frame = -2 Query: 47 WDLNLNVSAECSY 9 W+ N N+S +C Y Sbjct: 116 WNPNTNISEDCLY 128 >AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate receptor 1 protein. Length = 953 Score = 20.6 bits (41), Expect = 6.9 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = +2 Query: 32 LNLNPNFVDKTVTH 73 LN N N+V+K VT+ Sbjct: 56 LNFNLNYVNKGVTY 69 >Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 protein. Length = 402 Score = 20.2 bits (40), Expect = 9.1 Identities = 7/16 (43%), Positives = 12/16 (75%) Frame = +3 Query: 252 RTSADARRXGVLCLRH 299 R+SAD+ + G++ RH Sbjct: 379 RSSADSCQVGIMAQRH 394 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 20.2 bits (40), Expect = 9.1 Identities = 7/26 (26%), Positives = 16/26 (61%) Frame = +2 Query: 5 SSRNIPPTRLNLNPNFVDKTVTHNIY 82 +S+ +PP +L + +DKT ++ + Sbjct: 1226 TSQKVPPNQLTHEASELDKTRRYDFW 1251 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 92,505 Number of Sequences: 438 Number of extensions: 1634 Number of successful extensions: 8 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8 length of database: 146,343 effective HSP length: 52 effective length of database: 123,567 effective search space used: 9885360 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.2 bits)
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