Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0897.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   5.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   9.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.1  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 319 LLPRPEL*RKHRTPXRRASADVRSQ 245
           +LPR  + R++ TP +R+  D R Q
Sbjct: 348 VLPRLLVMRRYNTPSKRSDYDSRPQ 372


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 89  SIDKYCALLFCLRNWDLNLNVSAECSY-WI 3
           S+D+Y A++  L+ WD++       S+ WI
Sbjct: 133 SMDRYYAVIKPLQLWDVDKRGKIMLSFAWI 162


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 190  LDSSLYL*LPTKYSLDI 140
            +DS+L++  P K SLD+
Sbjct: 995  IDSNLHVYAPLKISLDV 1011


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 47  WDLNLNVSAECSY 9
           W+ N N+S +C Y
Sbjct: 116 WNPNTNISEDCLY 128


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 47  WDLNLNVSAECSY 9
           W+ N N+S +C Y
Sbjct: 116 WNPNTNISEDCLY 128


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
          receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 32 LNLNPNFVDKTVTH 73
          LN N N+V+K VT+
Sbjct: 56 LNFNLNYVNKGVTY 69


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 252 RTSADARRXGVLCLRH 299
           R+SAD+ + G++  RH
Sbjct: 379 RSSADSCQVGIMAQRH 394


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +2

Query: 5    SSRNIPPTRLNLNPNFVDKTVTHNIY 82
            +S+ +PP +L    + +DKT  ++ +
Sbjct: 1226 TSQKVPPNQLTHEASELDKTRRYDFW 1251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,505
Number of Sequences: 438
Number of extensions: 1634
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)