Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0897.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38840.1 68415.m04772 guanylate-binding family protein simila...    26   8.0  

>At2g38840.1 68415.m04772 guanylate-binding family protein similar
           to SP|Q01514 Interferon-induced guanylate-binding
           protein 1 (Guanine nucleotide-binding protein 1)
           (Interferon-gamma inducible protein MAG-1) {Mus
           musculus}; contains Pfam profile PF02263:
           Guanylate-binding protein, N-terminal domain
          Length = 679

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = -2

Query: 107 VKNE--NKSIDKYCALLFCL 54
           V NE  NK+ID+ C+L+FC+
Sbjct: 286 VPNEDGNKNIDQVCSLVFCI 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,057,026
Number of Sequences: 28952
Number of extensions: 118415
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)