Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0892.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   1.0  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   3.2  
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    26   3.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   4.2  
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    25   5.6  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    25   7.3  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.7  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   9.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   9.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -3

Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGV 274
           AP  PAAP+ P+A P   Q     ++P A+ V +  PP+  V P V
Sbjct: 544 APQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--PPVAPVAPEV 586


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 174 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 73
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 407 RQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 312
           ++ Q   FH+ + +GKH   R ++  GR K I
Sbjct: 53  KESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 258 TAFTQAWSRKNMPLLRKHIRYS 193
           TAFT+AW ++++P  +  +RY+
Sbjct: 34  TAFTKAWIKEDLPDKKYVVRYN 55


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 281 QESSFRREQLLHKPGQGKICLCFENIFDI 195
           +E SFR+ +L  +  QGK CL   N FD+
Sbjct: 77  EEHSFRKVKLRVEDIQGKSCLTSFNGFDM 105


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 250 YTSLVKEKYAFASKTYSIFLTISVRISVFNTTKHDLEY 137
           YT L  ++    +K Y I+LT + RIS+      ++ Y
Sbjct: 389 YTGLNPQQVDVLAKQYHIYLTKNGRISISGLNTSNVRY 426


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 252 FTQAWSRKNMPLLRKHIRYSLPSP 181
           + +AW     P L  H +Y +P+P
Sbjct: 122 YQKAWKSYENPSLSSHRQYQIPTP 145


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -3

Query: 417 KRAP--TVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 289
           KR P    PAAP+P  A P +  P  A   P+  +     P L L
Sbjct: 317 KRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRPLLML 361


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 73  SLCLTLISIHKKPRFCTGKKKKC 5
           +LC    +   KP FCTG   KC
Sbjct: 372 TLCRQSTNPCDKPEFCTGISSKC 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,525
Number of Sequences: 5004
Number of extensions: 35160
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)