Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0892.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0367 + 18220099-18220905 33 0.15
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 32 0.26
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 31 0.80
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 30 1.1
07_01_0313 + 2216498-2216953 29 3.2
04_04_0758 - 27826787-27828178 29 3.2
04_04_0757 - 27822139-27823530 29 3.2
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 28 4.3
07_01_0312 + 2214050-2214556 28 5.6
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 28 5.6
06_01_0099 + 824557-825532,826090-826245,826422-828064 28 5.6
05_07_0220 + 28482589-28483752 28 5.6
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 28 5.6
11_01_0019 + 135610-136296,136736-137275,137367-137518,137683-13... 27 7.5
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 27 7.5
10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643 27 9.9
06_03_0219 - 18227559-18227858,18227864-18228340 27 9.9
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 27 9.9
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533... 27 9.9
>02_03_0367 + 18220099-18220905
Length = 268
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 417 KRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 280
KR P P +P+ P+ P Q QP Q A +VH PP +FP
Sbjct: 150 KRRPPPPPSPMSPKVTPAQQQPPQP-----AEKVHDASPPPSSLFP 190
>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
Length = 380
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -3
Query: 420 DKRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHR 310
DK T+P AP PPQ PG+A P A ++P Q+ R
Sbjct: 146 DKAKATLPPAPFPPQ-HPGRADP--AEMMPPTKQIVR 179
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 407 RQCQQHRFHLKHVRGKHNHFRQFFYL 330
RQ QQ + +H+R +H+H R +FYL
Sbjct: 167 RQQQQQQLKGRHLRPRHSHRRGYFYL 192
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 435 QSXXTDKRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 298
QS T + P V P PPQ +P Q Q LQ LP+ +Q LPP
Sbjct: 196 QSQQTPQPQPQVHPQPQQPPQLQP-QPQLLQQPQLPQQLQPQSQLPP 241
>07_01_0313 + 2216498-2216953
Length = 151
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 408 PTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA 262
PTVPA +PP + AV LP V T+PP +V P ++ A
Sbjct: 81 PTVPAVTMPPMP---AVPAVPAVTLPPMPAV-PTVPPNTVVVPAAVVPA 125
>04_04_0758 - 27826787-27828178
Length = 463
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 402 VPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 289
V A P P Q Q L +L R + VH PP L
Sbjct: 11 VVAVPFPAQGHLNQLMHLSLLLASRGLDVHYAAPPAHL 48
>04_04_0757 - 27822139-27823530
Length = 463
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 402 VPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 289
V A P P Q Q L +L R + VH PP L
Sbjct: 11 VVAVPFPAQGHLNQLMHLSLLLASRGLDVHYAAPPAHL 48
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = -3
Query: 414 RAPTVPA---APIPPQARPGQAQPLQAV---LLPRAVQVHRTLPP 298
RAP VPA AP PP PG Q Q V L+P + + T PP
Sbjct: 165 RAPLVPAPPPAPFPPVPTPGMTQAPQMVPGALIPMVLPI--TDPP 207
>07_01_0312 + 2214050-2214556
Length = 168
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -3
Query: 438 VQSXXTDKRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 295
V + T P VPAA +PP P AVL P TLPP+
Sbjct: 95 VPAVPTVPAVPAVPAASLPPM--PAVPAVPNAVLPPMPAVPKVTLPPM 140
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -3
Query: 417 KRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 298
++ P P P+P A+P Q A P A LPP
Sbjct: 38 QQPPMTPTTPLPEAAKPPQNPEKTAASSPHAPSSRPPLPP 77
>06_01_0099 + 824557-825532,826090-826245,826422-828064
Length = 924
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 414 RAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRT 307
RAP + P+PP + P Q P + PR HR+
Sbjct: 412 RAPAMAPYPLPPPSPPQQQLPPASSSKPRRPPPHRS 447
>05_07_0220 + 28482589-28483752
Length = 387
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -3
Query: 405 TVPAAPIPPQARPGQ-----AQPLQAVLLPRAVQVHRT 307
TVPA P PPQ+ P A P + +LP+++ + T
Sbjct: 172 TVPALPPPPQSPPAALMNPVAVPEKQAVLPKSISIRST 209
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -3
Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLP 331
AP PAAP ARP QP AV P
Sbjct: 80 APPPPAAPAVTPARPPPQQPAVAVAAP 106
>11_01_0019 +
135610-136296,136736-137275,137367-137518,137683-137959
Length = 551
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -3
Query: 432 SXXTDKRAPTVPAAPIPPQARPGQAQ---PLQAVLLPRAVQVHR 310
S ++ AP+ PA P PP P A + A L RA Q HR
Sbjct: 42 SLSSNAAAPSHPAPPPPPPEEPSDASCALAVHAADLARAEQDHR 85
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 280
AP +P++ PP A P + PLQ + + PPL + P
Sbjct: 321 APPIPSSEPPPSALPNNSFPLQPPGGSLSTLSYTGPPPLMNIMP 364
>10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643
Length = 532
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -3
Query: 408 PTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGV 274
P P P+P A P A PL + LP + L PG+
Sbjct: 222 PPTPPRPLPDMAGPSSATPLLPLQLPGLAGSSSAMSLPALQLPGM 266
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -3
Query: 399 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 292
PAAP PP A P P A+ PR LPP R
Sbjct: 89 PAAPSPPPASPPPPPPRLALRFPRRPP---ELPPRR 121
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 456 RSQKXXVQSXXTDKRAPTVPAAPIPPQA 373
R Q + RAP+ PA P PPQA
Sbjct: 59 RKQYIIIPGRQAASRAPSPPAPPSPPQA 86
>01_06_1089 -
34451982-34452670,34452755-34452814,34453287-34453352,
34454055-34454253,34454470-34454719,34454830-34454898,
34455733-34455804,34456027-34456168,34456544-34457064,
34457166-34457739,34459164-34459269
Length = 915
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 159 VLNTDILTEMVRNIEYVFEAKAYFSLTR 242
+++TD LT +++Y+ E K Y+S TR
Sbjct: 388 LVHTDNLTTSPDDVDYMKEVKKYYSYTR 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,519,228
Number of Sequences: 37544
Number of extensions: 223960
Number of successful extensions: 741
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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