Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0892.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_34103| Best HMM Match : TPR_1 (HMM E-Value=5.6e-23) 31 0.82
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 30 1.4
SB_2986| Best HMM Match : Tis11B_C (HMM E-Value=6.6) 30 1.4
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24) 29 2.5
SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 28 5.8
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 27 7.6
SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07) 27 7.6
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 7.6
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9) 24 8.4
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 399 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 271
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_34103| Best HMM Match : TPR_1 (HMM E-Value=5.6e-23)
Length = 290
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -1
Query: 419 ISELRQCQQHRFHL-KHVRGKHNHFRQFFYLG-RFKYIGRFLHFV*CFQESSFRREQLLH 246
+ E + C + HL K + R + LG ++ IG + + C+ E ++L
Sbjct: 88 LQEAKHCHERHLHLAKGCNNARSEKRAYCNLGCTYRRIGSLDNAIECYDEGLKLAKELGD 147
Query: 245 KPGQGKICLCFENIFD 198
+ G+GK+ NI++
Sbjct: 148 RTGEGKLINNLANIYE 163
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -3
Query: 435 QSXXTDKRAPTVPAAPIPPQARPGQAQPL---QAVLLPRAVQVHRTLPPLRLVFPGVIIQ 265
+S T +P+VP P PP +PG A + + + V+ + P RL P +
Sbjct: 2309 RSPSTGSHSPSVPPPPPPPPEQPGDAMDIEDEEGQPSGSKILVNTPIAPTRLALPQQPMN 2368
Query: 264 A*TAFTQAWSRKNMP 220
+ + Q S++ P
Sbjct: 2369 HVSDYAQVHSQQPPP 2383
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 298
+P +P AP+ P P P +A+ P LPP
Sbjct: 217 SPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_2986| Best HMM Match : Tis11B_C (HMM E-Value=6.6)
Length = 308
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 262 VNSFYTSLVKEKYAFASKTYSIFLTISVRISVFNTTKHDLEYS 134
V++ LVKE+Y + +K ++ I + N KH+L+YS
Sbjct: 49 VDNLLKKLVKEEYEYTNKIVTLGTNICDFNNTSNLKKHELDYS 91
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -3
Query: 405 TVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 298
T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 1007 TLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
Length = 729
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 277 SHHSGVNSFYTSLVKEKYAFASKTYSIFLTISVRISVFNT 158
SHH G +SF++SL +++ + T S+ R+ V NT
Sbjct: 396 SHHHGKSSFFSSLSSSRWSAKASTSSLPADGLPRVDVNNT 435
>SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 254 LLHKPGQGKICLCFENIFDIPYHLR 180
LL P GKI CF NI P H++
Sbjct: 279 LLESPSFGKIIECFRNILASPGHIK 303
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 408 PTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 280
P+ A+ IPP RP ++P++ P + H +LP RL +P
Sbjct: 38 PSENASTIPPITRPLTSRPIRG-QHPPVRRAHDSLPSERLDYP 79
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -3
Query: 399 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPG 277
P PIP QA PGQA P + P VQ + + P FPG
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPG 43
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 131 QGILQVVFSCIKHRYSYGDGKEYRICFRSKGIFFLDQACVK 253
Q I + F+CIKH + D + +C R F+ C +
Sbjct: 236 QAIRRYSFTCIKHSFQLSDDRFSELCTRQVIADFVPIGCYR 276
>SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)
Length = 732
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 87 NRSKSLSKI*NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFSLTR 242
NRS +LS K Y S++ + L T RN+ FE K Y + +R
Sbjct: 432 NRSCNLSIDLKTKKYMNRSRNLSIELETKKNMNQSRNLSIDFETKKYMNRSR 483
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 414 RAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 298
R TVP P+PP P Q+ P +L+P + LPP
Sbjct: 629 RPTTVP--PLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
Length = 706
Score = 23.8 bits (49), Expect(2) = 8.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 298 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC 396
W Y N + +C K C+ C WNRCC
Sbjct: 306 WSAEERYNNSCQLGHCKK-ACIG--CPDWNRCC 335
Score = 21.8 bits (44), Expect(2) = 8.4
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +1
Query: 373 CLRWNRCCW 399
C WN+CC+
Sbjct: 346 CPSWNKCCY 354
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,605,952
Number of Sequences: 59808
Number of extensions: 266418
Number of successful extensions: 708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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