Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0892.Seq
(548 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y10262-1|CAA71311.1| 573|Homo sapiens EYA3 protein. 31 3.5
BC029500-1|AAH29500.1| 362|Homo sapiens EYA3 protein protein. 31 3.5
AL512288-7|CAI14297.1| 573|Homo sapiens eyes absent homolog 3 (... 31 3.5
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat... 31 3.5
AL611964-2|CAH73872.1| 495|Homo sapiens REST corepressor 3 prot... 30 4.6
AL590101-2|CAH72433.1| 495|Homo sapiens REST corepressor 3 prot... 30 4.6
AK001738-1|BAA91872.1| 495|Homo sapiens protein ( Homo sapiens ... 30 4.6
AB037764-1|BAA92581.1| 520|Homo sapiens KIAA1343 protein protein. 30 4.6
X76091-1|CAA53705.1| 723|Homo sapiens DNA binding protein RFX2 ... 30 6.1
BC071571-1|AAH71571.1| 723|Homo sapiens RFX2 protein protein. 30 6.1
BC028579-1|AAH28579.1| 723|Homo sapiens regulatory factor X, 2 ... 30 6.1
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ... 30 6.1
AK126463-1|BAC86558.1| 559|Homo sapiens protein ( Homo sapiens ... 30 6.1
AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein. 30 6.1
AL132655-8|CAM28316.1| 625|Homo sapiens GNAS complex locus prot... 29 8.1
>Y10262-1|CAA71311.1| 573|Homo sapiens EYA3 protein.
Length = 573
Score = 30.7 bits (66), Expect = 3.5
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Frame = -3
Query: 456 RSQKXXVQSXXTDKRAPTVPAAPIPPQARPGQAQ--PLQAV----LLPRAVQVHRTLPPL 295
RS + K + + P+ A PGQ Q LQ + P+A Q + LPP
Sbjct: 62 RSSNDYTSQMYSAKPYAHILSVPVSETAYPGQTQYQTLQQTQPDAVYPQATQTYG-LPPF 120
Query: 294 RLVFPGVIIQA*TAFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTT 145
++PG+ ++ T + S+ ++ + S PSP Y IQ ++T
Sbjct: 121 GALWPGMKPESGLIQTPSPSQHSVLTCTTGLTTSQPSPAHYSYPIQASST 170
>BC029500-1|AAH29500.1| 362|Homo sapiens EYA3 protein protein.
Length = 362
Score = 30.7 bits (66), Expect = 3.5
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Frame = -3
Query: 456 RSQKXXVQSXXTDKRAPTVPAAPIPPQARPGQAQ--PLQAV----LLPRAVQVHRTLPPL 295
RS + K + + P+ A PGQ Q LQ + P+A Q + LPP
Sbjct: 62 RSSNDYTSQMYSAKPYAHILSVPVSETAYPGQTQYQTLQQTQPYAVYPQATQTYG-LPPF 120
Query: 294 RLVFPGVIIQA*TAFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTT 145
++PG+ ++ T + S+ ++ + S PSP Y IQ ++T
Sbjct: 121 GALWPGMKPESGLIQTPSPSQHSVLTCTTGLTTSQPSPAHYSYPIQASST 170
>AL512288-7|CAI14297.1| 573|Homo sapiens eyes absent homolog 3
(Drosophila) protein.
Length = 573
Score = 30.7 bits (66), Expect = 3.5
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Frame = -3
Query: 456 RSQKXXVQSXXTDKRAPTVPAAPIPPQARPGQAQ--PLQAV----LLPRAVQVHRTLPPL 295
RS + K + + P+ A PGQ Q LQ + P+A Q + LPP
Sbjct: 62 RSSNDYTSQMYSAKPYAHILSVPVSETAYPGQTQYQTLQQTQPYAVYPQATQTYG-LPPF 120
Query: 294 RLVFPGVIIQA*TAFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTT 145
++PG+ ++ T + S+ ++ + S PSP Y IQ ++T
Sbjct: 121 GALWPGMKPESGLIQTPSPSQHSVLTCTTGLTTSQPSPAHYSYPIQASST 170
>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
SRCAP protein.
Length = 2971
Score = 30.7 bits (66), Expect = 3.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 423 TDKRAPTVPAAPIPPQARPGQAQPLQAVL 337
T AP VPAAP PP +P A P + L
Sbjct: 1218 TPPLAPVVPAAPGPPSLQPSGASPSASAL 1246
>AL611964-2|CAH73872.1| 495|Homo sapiens REST corepressor 3
protein.
Length = 495
Score = 30.3 bits (65), Expect = 4.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 292
AP+ P P A Q PL LP A +HR PPL+
Sbjct: 397 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 436
>AL590101-2|CAH72433.1| 495|Homo sapiens REST corepressor 3
protein.
Length = 495
Score = 30.3 bits (65), Expect = 4.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 292
AP+ P P A Q PL LP A +HR PPL+
Sbjct: 397 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 436
>AK001738-1|BAA91872.1| 495|Homo sapiens protein ( Homo sapiens
cDNA FLJ10876 fis, clone NT2RP4001838, weakly similar to
Homo sapiens CoREST protein mRNA. ).
Length = 495
Score = 30.3 bits (65), Expect = 4.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 292
AP+ P P A Q PL LP A +HR PPL+
Sbjct: 397 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 436
>AB037764-1|BAA92581.1| 520|Homo sapiens KIAA1343 protein protein.
Length = 520
Score = 30.3 bits (65), Expect = 4.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 292
AP+ P P A Q PL LP A +HR PPL+
Sbjct: 422 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 461
>X76091-1|CAA53705.1| 723|Homo sapiens DNA binding protein RFX2
protein.
Length = 723
Score = 29.9 bits (64), Expect = 6.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 411 APTVPAAPIPPQARPGQAQP----LQAVLLPRAVQVHRTLPPLRLVFPGVI 271
AP VPA+P + + P +Q + LPR QV + + P++ V+P +
Sbjct: 22 APPVPASPQRVLVQAASSNPKGSQMQPISLPRVQQVPQQVQPVQHVYPAQV 72
>BC071571-1|AAH71571.1| 723|Homo sapiens RFX2 protein protein.
Length = 723
Score = 29.9 bits (64), Expect = 6.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 411 APTVPAAPIPPQARPGQAQP----LQAVLLPRAVQVHRTLPPLRLVFPGVI 271
AP VPA+P + + P +Q + LPR QV + + P++ V+P +
Sbjct: 22 APPVPASPQRVLVQAASSNPKGAQMQPISLPRVQQVPQQVQPVQHVYPAQV 72
>BC028579-1|AAH28579.1| 723|Homo sapiens regulatory factor X, 2
(influences HLA class II expression) protein.
Length = 723
Score = 29.9 bits (64), Expect = 6.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 411 APTVPAAPIPPQARPGQAQP----LQAVLLPRAVQVHRTLPPLRLVFPGVI 271
AP VPA+P + + P +Q + LPR QV + + P++ V+P +
Sbjct: 22 APPVPASPQRVLVQAASSNPKGAQMQPISLPRVQQVPQQVQPVQHVYPAQV 72
>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens cDNA
FLJ46149 fis, clone TESTI4000621, moderately similar to
Homo sapiens Snf2-related CBP activator protein (SRCAP).
).
Length = 2427
Score = 29.9 bits (64), Expect = 6.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 423 TDKRAPTVPAAPIPPQARPGQAQPLQAVL 337
T AP VPAAP PP P A P + L
Sbjct: 1477 TPPLAPVVPAAPGPPSLAPSGASPSASAL 1505
>AK126463-1|BAC86558.1| 559|Homo sapiens protein ( Homo sapiens
cDNA FLJ44499 fis, clone UTERU3000665, highly similar
to Homo sapiens Snf2-related CBP activator protein
(SRCAP). ).
Length = 559
Score = 29.9 bits (64), Expect = 6.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 423 TDKRAPTVPAAPIPPQARPGQAQPLQAVL 337
T AP VPAAP PP P A P + L
Sbjct: 126 TPPLAPVVPAAPGPPSLAPSGASPSASAL 154
>AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.
Length = 3053
Score = 29.9 bits (64), Expect = 6.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 423 TDKRAPTVPAAPIPPQARPGQAQPLQAVL 337
T AP VPAAP PP P A P + L
Sbjct: 1300 TPPLAPVVPAAPGPPSLAPSGASPSASAL 1328
>AL132655-8|CAM28316.1| 625|Homo sapiens GNAS complex locus
protein.
Length = 625
Score = 29.5 bits (63), Expect = 8.1
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = -3
Query: 402 VPAAPIPPQARPGQAQPLQAV---LLPRAVQVH----RTLPPLRLVFPG 277
+P PIP RP QP+ L P+ +Q+ R PPLRL+ PG
Sbjct: 372 LPPQPIPTPGRPLTPQPIPTPGRPLTPQPIQMPGRPLRLPPPLRLLRPG 420
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,631,786
Number of Sequences: 237096
Number of extensions: 1217771
Number of successful extensions: 4014
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3994
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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