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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0892.Seq
         (548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y10262-1|CAA71311.1|  573|Homo sapiens EYA3 protein.                   31   3.5  
BC029500-1|AAH29500.1|  362|Homo sapiens EYA3 protein protein.         31   3.5  
AL512288-7|CAI14297.1|  573|Homo sapiens eyes absent homolog 3 (...    31   3.5  
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat...    31   3.5  
AL611964-2|CAH73872.1|  495|Homo sapiens REST corepressor 3 prot...    30   4.6  
AL590101-2|CAH72433.1|  495|Homo sapiens REST corepressor 3 prot...    30   4.6  
AK001738-1|BAA91872.1|  495|Homo sapiens protein ( Homo sapiens ...    30   4.6  
AB037764-1|BAA92581.1|  520|Homo sapiens KIAA1343 protein protein.     30   4.6  
X76091-1|CAA53705.1|  723|Homo sapiens DNA binding protein RFX2 ...    30   6.1  
BC071571-1|AAH71571.1|  723|Homo sapiens RFX2 protein protein.         30   6.1  
BC028579-1|AAH28579.1|  723|Homo sapiens regulatory factor X, 2 ...    30   6.1  
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ...    30   6.1  
AK126463-1|BAC86558.1|  559|Homo sapiens protein ( Homo sapiens ...    30   6.1  
AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.             30   6.1  
AL132655-8|CAM28316.1|  625|Homo sapiens GNAS complex locus prot...    29   8.1  

>Y10262-1|CAA71311.1|  573|Homo sapiens EYA3 protein.
          Length = 573

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
 Frame = -3

Query: 456 RSQKXXVQSXXTDKRAPTVPAAPIPPQARPGQAQ--PLQAV----LLPRAVQVHRTLPPL 295
           RS         + K    + + P+   A PGQ Q   LQ      + P+A Q +  LPP 
Sbjct: 62  RSSNDYTSQMYSAKPYAHILSVPVSETAYPGQTQYQTLQQTQPDAVYPQATQTYG-LPPF 120

Query: 294 RLVFPGVIIQA*TAFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTT 145
             ++PG+  ++    T + S+ ++      +  S PSP  Y   IQ ++T
Sbjct: 121 GALWPGMKPESGLIQTPSPSQHSVLTCTTGLTTSQPSPAHYSYPIQASST 170


>BC029500-1|AAH29500.1|  362|Homo sapiens EYA3 protein protein.
          Length = 362

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
 Frame = -3

Query: 456 RSQKXXVQSXXTDKRAPTVPAAPIPPQARPGQAQ--PLQAV----LLPRAVQVHRTLPPL 295
           RS         + K    + + P+   A PGQ Q   LQ      + P+A Q +  LPP 
Sbjct: 62  RSSNDYTSQMYSAKPYAHILSVPVSETAYPGQTQYQTLQQTQPYAVYPQATQTYG-LPPF 120

Query: 294 RLVFPGVIIQA*TAFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTT 145
             ++PG+  ++    T + S+ ++      +  S PSP  Y   IQ ++T
Sbjct: 121 GALWPGMKPESGLIQTPSPSQHSVLTCTTGLTTSQPSPAHYSYPIQASST 170


>AL512288-7|CAI14297.1|  573|Homo sapiens eyes absent homolog 3
           (Drosophila) protein.
          Length = 573

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
 Frame = -3

Query: 456 RSQKXXVQSXXTDKRAPTVPAAPIPPQARPGQAQ--PLQAV----LLPRAVQVHRTLPPL 295
           RS         + K    + + P+   A PGQ Q   LQ      + P+A Q +  LPP 
Sbjct: 62  RSSNDYTSQMYSAKPYAHILSVPVSETAYPGQTQYQTLQQTQPYAVYPQATQTYG-LPPF 120

Query: 294 RLVFPGVIIQA*TAFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTT 145
             ++PG+  ++    T + S+ ++      +  S PSP  Y   IQ ++T
Sbjct: 121 GALWPGMKPESGLIQTPSPSQHSVLTCTTGLTTSQPSPAHYSYPIQASST 170


>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
            SRCAP protein.
          Length = 2971

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 423  TDKRAPTVPAAPIPPQARPGQAQPLQAVL 337
            T   AP VPAAP PP  +P  A P  + L
Sbjct: 1218 TPPLAPVVPAAPGPPSLQPSGASPSASAL 1246


>AL611964-2|CAH73872.1|  495|Homo sapiens REST corepressor 3
           protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 292
           AP+    P  P A   Q  PL    LP A  +HR  PPL+
Sbjct: 397 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 436


>AL590101-2|CAH72433.1|  495|Homo sapiens REST corepressor 3
           protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 292
           AP+    P  P A   Q  PL    LP A  +HR  PPL+
Sbjct: 397 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 436


>AK001738-1|BAA91872.1|  495|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10876 fis, clone NT2RP4001838, weakly similar to
           Homo sapiens CoREST protein mRNA. ).
          Length = 495

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 292
           AP+    P  P A   Q  PL    LP A  +HR  PPL+
Sbjct: 397 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 436


>AB037764-1|BAA92581.1|  520|Homo sapiens KIAA1343 protein protein.
          Length = 520

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 411 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLR 292
           AP+    P  P A   Q  PL    LP A  +HR  PPL+
Sbjct: 422 APSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQ 461


>X76091-1|CAA53705.1|  723|Homo sapiens DNA binding protein RFX2
           protein.
          Length = 723

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 411 APTVPAAPIPPQARPGQAQP----LQAVLLPRAVQVHRTLPPLRLVFPGVI 271
           AP VPA+P     +   + P    +Q + LPR  QV + + P++ V+P  +
Sbjct: 22  APPVPASPQRVLVQAASSNPKGSQMQPISLPRVQQVPQQVQPVQHVYPAQV 72


>BC071571-1|AAH71571.1|  723|Homo sapiens RFX2 protein protein.
          Length = 723

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 411 APTVPAAPIPPQARPGQAQP----LQAVLLPRAVQVHRTLPPLRLVFPGVI 271
           AP VPA+P     +   + P    +Q + LPR  QV + + P++ V+P  +
Sbjct: 22  APPVPASPQRVLVQAASSNPKGAQMQPISLPRVQQVPQQVQPVQHVYPAQV 72


>BC028579-1|AAH28579.1|  723|Homo sapiens regulatory factor X, 2
           (influences HLA class II expression) protein.
          Length = 723

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 411 APTVPAAPIPPQARPGQAQP----LQAVLLPRAVQVHRTLPPLRLVFPGVI 271
           AP VPA+P     +   + P    +Q + LPR  QV + + P++ V+P  +
Sbjct: 22  APPVPASPQRVLVQAASSNPKGAQMQPISLPRVQQVPQQVQPVQHVYPAQV 72


>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens cDNA
            FLJ46149 fis, clone TESTI4000621, moderately  similar to
            Homo sapiens Snf2-related CBP activator protein (SRCAP).
            ).
          Length = 2427

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -3

Query: 423  TDKRAPTVPAAPIPPQARPGQAQPLQAVL 337
            T   AP VPAAP PP   P  A P  + L
Sbjct: 1477 TPPLAPVVPAAPGPPSLAPSGASPSASAL 1505


>AK126463-1|BAC86558.1|  559|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44499 fis, clone UTERU3000665, highly  similar
           to Homo sapiens Snf2-related CBP activator protein
           (SRCAP). ).
          Length = 559

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -3

Query: 423 TDKRAPTVPAAPIPPQARPGQAQPLQAVL 337
           T   AP VPAAP PP   P  A P  + L
Sbjct: 126 TPPLAPVVPAAPGPPSLAPSGASPSASAL 154


>AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.
          Length = 3053

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -3

Query: 423  TDKRAPTVPAAPIPPQARPGQAQPLQAVL 337
            T   AP VPAAP PP   P  A P  + L
Sbjct: 1300 TPPLAPVVPAAPGPPSLAPSGASPSASAL 1328


>AL132655-8|CAM28316.1|  625|Homo sapiens GNAS complex locus
           protein.
          Length = 625

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = -3

Query: 402 VPAAPIPPQARPGQAQPLQAV---LLPRAVQVH----RTLPPLRLVFPG 277
           +P  PIP   RP   QP+      L P+ +Q+     R  PPLRL+ PG
Sbjct: 372 LPPQPIPTPGRPLTPQPIPTPGRPLTPQPIQMPGRPLRLPPPLRLLRPG 420


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,631,786
Number of Sequences: 237096
Number of extensions: 1217771
Number of successful extensions: 4014
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3994
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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