Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0892.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    29   1.7  
U49829-2|AAA93383.1|  183|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical p...    28   3.9  
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    28   5.1  

>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 24/82 (29%), Positives = 37/82 (45%)
 Frame = -3

Query: 453 SQKXXVQSXXTDKRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGV 274
           +Q    Q+  T ++AP +  A  PP     QAQ  QA   P A Q+    PP  +V    
Sbjct: 89  AQAPPAQAKPTVQQAPIL-VAQAPPNPPAPQAQQHQAPAPPAARQIPVQQPPKPVVQQAP 147

Query: 273 IIQA*TAFTQAWSRKNMPLLRK 208
             QA  +  QA   +  P++++
Sbjct: 148 AQQAPKSVAQAPPAQAKPIVQQ 169



 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -3

Query: 435 QSXXTDKRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 298
           Q       AP   A PI  Q +P Q Q  QA    + + V +  PP
Sbjct: 34  QQQQAQAHAPPAQAKPIVQQTQPAQKQQAQAPPAAQQIPVVQQAPP 79



 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 417 KRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 301
           ++AP V  AP PP+ +  QAQP+Q    P  V    + P
Sbjct: 253 QQAPVVQQAP-PPKQQQAQAQPVQQPPNPAPVVQQASAP 290



 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 417 KRAPTVPAAPIPPQARPGQAQPLQ 346
           ++APT  AAP PP+  P QA P+Q
Sbjct: 316 QQAPT-RAAPAPPKPAPQQAPPVQ 338


>U49829-2|AAA93383.1|  183|Caenorhabditis elegans Hypothetical
           protein F27D9.4 protein.
          Length = 183

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -2

Query: 268 SGVNSFYTSLVKEKYAFASKTYSIFLTISVRISVFNTTKHDLE 140
           S +NS ++ L+ +KYA  SK   + L +S+     NTT H LE
Sbjct: 73  SFINSSHSPLLPQKYACFSKNAVVSLALSL---AENTTDHSLE 112


>Z75529-5|CAA99784.1|  610|Caenorhabditis elegans Hypothetical
           protein C44H9.6 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = +1

Query: 244 LCKSCSRLNDDSWKH*TKWRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHC 405
           L K   R   +   + + W+KRP Y  R R ++  K   LP +     + C    W C
Sbjct: 549 LKKKAIRRRTEMMSYRSFWKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRC 606


>U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical
           protein C37C3.11 protein.
          Length = 161

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 128 LQGILQVVFSCIKHRYSYGDGKEYRICFRSKGIFFLDQACVKAV 259
           L G+L V    ++  +S  +G +Y ICF   G+    Q  VK V
Sbjct: 104 LFGVLYVPLFFLQTSHSLMEGLDYFICFSLSGVLLFLQWAVKQV 147


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 408 PTVP-AAPIPPQARPGQAQP 352
           P++P   P+PPQ  PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,085,765
Number of Sequences: 27780
Number of extensions: 199128
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)