Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0892.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40330.1 68415.m04972 Bet v I allergen family protein contain...    29   1.5  
At5g39560.1 68418.m04792 kelch repeat-containing F-box family pr...    28   3.6  
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    28   3.6  
At5g02400.1 68418.m00163 protein phosphatase 2C family protein /...    28   3.6  
At1g13050.1 68414.m01513 expressed protein                             28   4.7  
At3g09400.1 68416.m01116 protein phosphatase 2C family protein /...    27   8.3  

>At2g40330.1 68415.m04972 Bet v I allergen family protein contains
           Pfam profile PF00407: Pathogenesis-related protein Bet v
           I family
          Length = 215

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 102 LSKI*NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFSLTRL 245
           LS+  + + YK + KSC VV+        VR +  V    A FSL RL
Sbjct: 80  LSRFEHPQAYKHFVKSCHVVIGDGREVGSVREVRVVSGLPAAFSLERL 127


>At5g39560.1 68418.m04792 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif
          Length = 395

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 303 PPLRLVFPGVIIQA*TAFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTT 145
           PP  +  P  II+   A    WS  N+ L+ K     L SP  Y+   ++ TT
Sbjct: 18  PPSLMSLPYEIIENILARISKWSYPNLSLVSKSFLSLLSSPQLYKTRSEIGTT 70


>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/75 (22%), Positives = 31/75 (41%)
 Frame = -1

Query: 422 PISELRQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYIGRFLHFV*CFQESSFRREQLLHK 243
           P S ++  Q H  H     G+  +F+ FF+  +      +L    C   +S  + Q+  K
Sbjct: 760 PQSLIKHMQSHSIHCIASGGQSPNFKFFFFAQKESEPSNYL--TECIINTSSAKAQIKVK 817

Query: 242 PGQGKICLCFENIFD 198
             +   C  F  +F+
Sbjct: 818 ADEQSTCQAFTTVFE 832


>At5g02400.1 68418.m00163 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 674

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 117 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFS 233
           +L H+K  S+   ++L++D L E   N E +FE +++ S
Sbjct: 575 SLCHHKLTSRDKFLILSSDGLYEYFSNQEAIFEVESFIS 613


>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 438 VQSXXTDKRAPTVPAAPIPPQARPGQAQPLQ 346
           +    + +  P  P  P+PP+  P  A+PLQ
Sbjct: 64  IHESPSSRPLPLRPEEPLPPRHNPNSARPLQ 94


>At3g09400.1 68416.m01116 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 650

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 117 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFS 233
           +L H++  S+   ++L++D L E   N E +FE  ++ S
Sbjct: 551 SLHHHRLSSRDKFLILSSDGLYEYFSNEEAIFEVDSFIS 589


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,366,108
Number of Sequences: 28952
Number of extensions: 181934
Number of successful extensions: 445
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)