Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0889.Seq
         (349 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000519CB3 Cluster: PREDICTED: similar to CG5859-PA;...    36   0.25 
UniRef50_Q5Z1Y7 Cluster: Putative uncharacterized protein; n=1; ...    35   0.34 
UniRef50_UPI00005A9609 Cluster: PREDICTED: similar to USP6 N-ter...    34   0.59 
UniRef50_Q640I9 Cluster: JmjC domain-containing histone demethyl...    33   1.8  
UniRef50_UPI00005A604F Cluster: PREDICTED: similar to USP6 N-ter...    32   3.1  
UniRef50_A6LR11 Cluster: NMT1/THI5-like protein precursor; n=3; ...    31   4.1  
UniRef50_Q0JMK9 Cluster: Os01g0388500 protein; n=1; Oryza sativa...    30   9.5  

>UniRef50_UPI0000519CB3 Cluster: PREDICTED: similar to CG5859-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to CG5859-PA
           - Apis mellifera
          Length = 986

 Score = 35.5 bits (78), Expect = 0.25
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +3

Query: 15  ATQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESR 140
           A ++ S+E WD++ TA  P ++  Q +SN   + ++TGS SR
Sbjct: 695 AGRKFSREAWDMVLTAFGPSRDQPQKRSNSGNSGTSTGSASR 736


>UniRef50_Q5Z1Y7 Cluster: Putative uncharacterized protein; n=1;
           Nocardia farcinica|Rep: Putative uncharacterized protein
           - Nocardia farcinica
          Length = 563

 Score = 35.1 bits (77), Expect = 0.34
 Identities = 26/93 (27%), Positives = 42/93 (45%)
 Frame = +3

Query: 9   RWATQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRRETQRADAWV 188
           RW      +EGW   T      +E  + ++   A  +   ++ R A +   +T+ ADA  
Sbjct: 77  RWLRMTQCREGWHADTEPIDETREPSEQQTELLAARADAMADYRQARE-DGDTELADALA 135

Query: 189 RLHGELFVEFDEYGYRGP*ACPVLELKASNAKV 287
            +  E+  E  E G+RGP   P LE K+   +V
Sbjct: 136 DVVTEIDCEIRELGFRGP--LPPLEAKSRARRV 166


>UniRef50_UPI00005A9609 Cluster: PREDICTED: similar to USP6
           N-terminal like protein (Related to the N terminus of
           tre) (RN-tre), partial; n=1; Canis lupus familiaris|Rep:
           PREDICTED: similar to USP6 N-terminal like protein
           (Related to the N terminus of tre) (RN-tre), partial -
           Canis familiaris
          Length = 386

 Score = 34.3 bits (75), Expect = 0.59
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 96  SNCFANESTTGSESRPAEKIRRETQRADAWVRL 194
           S C  ++   G   R A+K+R+ET RAD W+++
Sbjct: 27  SPCAGDKELPGPSPREAKKLRQETWRADKWIKM 59


>UniRef50_Q640I9 Cluster: JmjC domain-containing histone
           demethylation protein 1B; n=5; Xenopus|Rep: JmjC
           domain-containing histone demethylation protein 1B -
           Xenopus laevis (African clawed frog)
          Length = 1259

 Score = 32.7 bits (71), Expect = 1.8
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 21  QRLSQEGWDLLTTARAPPKET*QLKSNC-FANESTTGSESRPAEKIRRE 164
           +R+ QE  D LT A    KE+ Q +S+   A  ST GSE +  +KIRR+
Sbjct: 812 RRIKQEPDDDLTEAAPKAKESDQSRSSSPTAGPSTEGSEPKEKKKIRRK 860


>UniRef50_UPI00005A604F Cluster: PREDICTED: similar to USP6
           N-terminal like; n=1; Canis lupus familiaris|Rep:
           PREDICTED: similar to USP6 N-terminal like - Canis
           familiaris
          Length = 752

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 105 FANESTTGSESRPAEKIRRETQRADAWVRL 194
           + ++   G   R A+K+R+ET RAD W+++
Sbjct: 9   YRDKELPGPSPREAKKLRQETPRADKWIKM 38


>UniRef50_A6LR11 Cluster: NMT1/THI5-like protein precursor; n=3;
           Clostridium|Rep: NMT1/THI5-like protein precursor -
           Clostridium beijerinckii NCIMB 8052
          Length = 332

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 6   DRWATQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRP--AEKIRRETQRAD 179
           D + T  +   G+ +LT     P    + KS CF   S    +  P   + I R  Q+AD
Sbjct: 194 DPFGTLAVENNGYTVLTDISTDPLF--KGKSCCFLYASENQIKENPDKVKAIARAYQKAD 251

Query: 180 AWVRLHGE 203
           AW++ H E
Sbjct: 252 AWIKEHPE 259


>UniRef50_Q0JMK9 Cluster: Os01g0388500 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os01g0388500 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 2196

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -1

Query: 145 AGRDSDPVVDSFAKQLLLSC*VSFGGARAVVSKSHPSWLSL 23
           AGR   P+V      L ++C       + VVS SHPSW+SL
Sbjct: 9   AGRCLLPLVLLAGYHLRVACCFLLPAVQLVVSISHPSWISL 49


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 286,598,344
Number of Sequences: 1657284
Number of extensions: 4627007
Number of successful extensions: 10221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10221
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)