Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0889.Seq
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   0.48 
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    25   3.4  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    24   7.8  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 96  SNCFANESTTGSESRPAEKIRRETQRADAWV 188
           S+C  +ES    ES PA K   E    D+W+
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWM 329


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 224 LVELDKEFXVQPNPCISPL 168
           L  LD+++    NPC+SPL
Sbjct: 257 LYNLDEDYHSDWNPCVSPL 275


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 90  LKSNCFANESTTGSESRPAEKIRRETQRADAWVRLHGELFVEFDE 224
           L  NCF     T    + A   + E +   + VR +G + VEF +
Sbjct: 484 LARNCFLPMVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSK 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,117,769
Number of Sequences: 5004
Number of extensions: 17414
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)