BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0889.Seq (349 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 28 0.48 SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 25 3.4 SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 24 7.8 >SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1096 Score = 27.9 bits (59), Expect = 0.48 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +3 Query: 96 SNCFANESTTGSESRPAEKIRRETQRADAWV 188 S+C +ES ES PA K E D+W+ Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWM 329 >SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces pombe|chr 1|||Manual Length = 275 Score = 25.0 bits (52), Expect = 3.4 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -3 Query: 224 LVELDKEFXVQPNPCISPL 168 L LD+++ NPC+SPL Sbjct: 257 LYNLDEDYHSDWNPCVSPL 275 >SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit Rad15|Schizosaccharomyces pombe|chr 1|||Manual Length = 772 Score = 23.8 bits (49), Expect = 7.8 Identities = 13/45 (28%), Positives = 20/45 (44%) Frame = +3 Query: 90 LKSNCFANESTTGSESRPAEKIRRETQRADAWVRLHGELFVEFDE 224 L NCF T + A + E + + VR +G + VEF + Sbjct: 484 LARNCFLPMVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSK 528 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,117,769 Number of Sequences: 5004 Number of extensions: 17414 Number of successful extensions: 38 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 38 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 104153322 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -