Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0889.Seq
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0033 - 5148513-5148806,5148928-5149271,5149391-5149472           27   3.1  
09_03_0068 + 12047193-12047548,12048302-12048428                       27   5.3  
03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052...    27   5.3  
09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135           26   7.1  
01_01_1112 + 8808544-8808695,8808818-8808961,8809302-8809380,880...    26   7.1  

>03_02_0033 - 5148513-5148806,5148928-5149271,5149391-5149472
          Length = 239

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 96  SNCFANESTTGSESRPAEKIRRETQRADAWVRLHGE 203
           + CF   +T+G E + A + RR   + +A   L GE
Sbjct: 18  AECFPEAATSGGEQKKARQRRRRKVKPEAAAALAGE 53


>09_03_0068 + 12047193-12047548,12048302-12048428
          Length = 160

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 189 RLHGELFVEFDEYGYRGP 242
           RLHG+LF      GY+GP
Sbjct: 29  RLHGKLFPPLSSTGYQGP 46


>03_06_0507 +
           34404843-34404968,34405091-34405151,34405260-34405296,
           34405365-34405386,34405861-34405957,34406037-34406180,
           34407034-34407173,34408205-34408255,34408347-34408429,
           34408515-34408590,34408646-34408760,34409080-34409575,
           34409682-34409895,34410000-34410070,34410527-34410695,
           34410787-34410916,34411330-34411742,34411839-34412039
          Length = 881

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 51  LTTARAPPKET*QLKSNCF-ANESTTGSESRPAEKIRRETQRADA 182
           L T RAP KE  Q K N   A ++   +E++ A+    E Q ADA
Sbjct: 98  LATHRAPLKERLQKKENAMQAKDADVTNEAKDADS-TNEAQDADA 141


>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
          Length = 485

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 129 SESRPAEKIRRETQRADAWVRL 194
           SES+P E  RR   R+ AW R+
Sbjct: 92  SESQPLETARRGALRSHAWARV 113


>01_01_1112 +
           8808544-8808695,8808818-8808961,8809302-8809380,
           8809477-8809555,8810338-8810377,8810455-8810589,
           8810901-8811038,8811596-8811881
          Length = 350

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 9   RWATQRLSQEGWDLLTTARAPPKET 83
           R+ +QRL  +GW +  T  +P K+T
Sbjct: 40  RYVSQRLLAQGWRVSGTCTSPAKKT 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,960,788
Number of Sequences: 37544
Number of extensions: 132882
Number of successful extensions: 251
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)