Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0889.Seq
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   3.2  
SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7)             27   4.2  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  

>SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -1

Query: 157 RIFSAGRDSDPVVDS-FAKQLLLSC*VSFGGARAVVSKSHPSWLS 26
           +I++ G   +PV D  F  QL +S   SFGG R+ +++ +PS +S
Sbjct: 724 KIYNLG-SKNPVFDGHFTNQLAIS---SFGGERSDIARLYPSPIS 764


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 33   QEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEK 152
            Q+ W L   A   P +  Q+   CF  E TT +    +EK
Sbjct: 1405 QDKWFLFNDAEVKPFDPSQIAGECFGGEMTTKTYDVVSEK 1444


>SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 233 VTVLVELDKEFXVQPNPCISPLSFSPDLL 147
           VT +++ DKE+  + +    P+SF PDLL
Sbjct: 397 VTSVLDYDKEYFAKVSDHRLPMSFCPDLL 425


>SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7)
          Length = 434

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +3

Query: 3   QDRWATQR---LSQEGWDLLTTARAPP-KET*QLKSNCFANESTTGSESRPAEKIRRETQ 170
           +D W  +    + +E   +L  AR    +E  +++      E+    + + +E+IR+E +
Sbjct: 184 RDEWKAREQELMEEENRRILEFARLQQQREEERMEKKKEQEEAMATVQQKLSERIRKEEE 243

Query: 171 RADAWVRLHGELFVEFDE 224
             D   R+  EL++E  E
Sbjct: 244 ERDEMERIRLELYIEEQE 261


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 6    DRWATQRLSQEGWDLLTTARAPPKET 83
            +RW TQ+ S E   ++ +   PP ET
Sbjct: 2259 ERWRTQKPSTEPVSIMQSQNTPPVET 2284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,701,832
Number of Sequences: 59808
Number of extensions: 139797
Number of successful extensions: 244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)