BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0889.Seq (349 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2 SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2 SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2 SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7) 27 4.2 SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7 >SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 937 Score = 27.5 bits (58), Expect = 3.2 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Frame = -1 Query: 157 RIFSAGRDSDPVVDS-FAKQLLLSC*VSFGGARAVVSKSHPSWLS 26 +I++ G +PV D F QL +S SFGG R+ +++ +PS +S Sbjct: 724 KIYNLG-SKNPVFDGHFTNQLAIS---SFGGERSDIARLYPSPIS 764 >SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2708 Score = 27.5 bits (58), Expect = 3.2 Identities = 13/40 (32%), Positives = 18/40 (45%) Frame = +3 Query: 33 QEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEK 152 Q+ W L A P + Q+ CF E TT + +EK Sbjct: 1405 QDKWFLFNDAEVKPFDPSQIAGECFGGEMTTKTYDVVSEK 1444 >SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 528 Score = 27.5 bits (58), Expect = 3.2 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -3 Query: 233 VTVLVELDKEFXVQPNPCISPLSFSPDLL 147 VT +++ DKE+ + + P+SF PDLL Sbjct: 397 VTSVLDYDKEYFAKVSDHRLPMSFCPDLL 425 >SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7) Length = 434 Score = 27.1 bits (57), Expect = 4.2 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Frame = +3 Query: 3 QDRWATQR---LSQEGWDLLTTARAPP-KET*QLKSNCFANESTTGSESRPAEKIRRETQ 170 +D W + + +E +L AR +E +++ E+ + + +E+IR+E + Sbjct: 184 RDEWKAREQELMEEENRRILEFARLQQQREEERMEKKKEQEEAMATVQQKLSERIRKEEE 243 Query: 171 RADAWVRLHGELFVEFDE 224 D R+ EL++E E Sbjct: 244 ERDEMERIRLELYIEEQE 261 >SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4527 Score = 25.8 bits (54), Expect = 9.7 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +3 Query: 6 DRWATQRLSQEGWDLLTTARAPPKET 83 +RW TQ+ S E ++ + PP ET Sbjct: 2259 ERWRTQKPSTEPVSIMQSQNTPPVET 2284 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,701,832 Number of Sequences: 59808 Number of extensions: 139797 Number of successful extensions: 244 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 241 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 244 length of database: 16,821,457 effective HSP length: 73 effective length of database: 12,455,473 effective search space used: 523129866 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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