BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0889.Seq (349 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ... 27 4.9 AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical ... 27 4.9 U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 26 8.5 U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 26 8.5 AY079165-1|AAL86012.1| 585|Caenorhabditis elegans NADPH-depende... 26 8.5 AL132858-12|CAB60480.1| 585|Caenorhabditis elegans Hypothetical... 26 8.5 >AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical protein Y73F8A.5 protein. Length = 1019 Score = 26.6 bits (56), Expect = 4.9 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 212 DKEFXVQPNPCISPLSFSPDLL 147 D E P PC+S LSFS +L+ Sbjct: 143 DGELIYIPTPCVSKLSFSANLV 164 >AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical protein C49G7.7 protein. Length = 893 Score = 26.6 bits (56), Expect = 4.9 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = +3 Query: 69 PPKET*QLKSNCFANESTTGSESRPAEKIRRETQRADAWVRLHGELFVEFDE 224 PPK +L++N F S+ R RR + D W L E + DE Sbjct: 801 PPKNYEKLRNNDFNPVSSFRKGHRVISHWRRTDEMLDIWFALRYEELEDLDE 852 >U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical protein F41G3.3 protein. Length = 577 Score = 25.8 bits (54), Expect = 8.5 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +3 Query: 3 QDRWATQRLSQEGWDLLTTARAPP 74 +D WA QR Q+ +D + PP Sbjct: 104 EDHWANQRDQQDFYDTVPATNVPP 127 >U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein C25H3.8 protein. Length = 2148 Score = 25.8 bits (54), Expect = 8.5 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Frame = +3 Query: 99 NCFA---NESTTGSESRPAEKIRRETQRADAWVRLHGELFVEFDEYGYRGP*ACPVLELK 269 NCF + +G SRPA + T ++ + L + ++ DE CPVL L Sbjct: 386 NCFPVILQHTDSGKHSRPATPV---TSSINSSLMLEAHIMMKKDE--------CPVLTLV 434 Query: 270 ASNAKVI 290 NA+VI Sbjct: 435 LCNARVI 441 >AY079165-1|AAL86012.1| 585|Caenorhabditis elegans NADPH-dependent flavin reductase protein. Length = 585 Score = 25.8 bits (54), Expect = 8.5 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 117 STTGSESRPAEKIRRETQRADAWVRLHGELFVEFDEY 227 S TG+ AE +RRE Q+ R+H E DEY Sbjct: 9 SETGTAQDIAESLRREAQQRHLQARVH-----ELDEY 40 >AL132858-12|CAB60480.1| 585|Caenorhabditis elegans Hypothetical protein Y113G7A.8 protein. Length = 585 Score = 25.8 bits (54), Expect = 8.5 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 117 STTGSESRPAEKIRRETQRADAWVRLHGELFVEFDEY 227 S TG+ AE +RRE Q+ R+H E DEY Sbjct: 9 SETGTAQDIAESLRREAQQRHLQARVH-----ELDEY 40 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,268,436 Number of Sequences: 27780 Number of extensions: 99978 Number of successful extensions: 265 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 265 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 265 length of database: 12,740,198 effective HSP length: 72 effective length of database: 10,740,038 effective search space used: 461821634 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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