Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0889.Seq
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    27   4.9  
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    27   4.9  
U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical p...    26   8.5  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-depende...    26   8.5  
AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical...    26   8.5  

>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 212 DKEFXVQPNPCISPLSFSPDLL 147
           D E    P PC+S LSFS +L+
Sbjct: 143 DGELIYIPTPCVSKLSFSANLV 164


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 69  PPKET*QLKSNCFANESTTGSESRPAEKIRRETQRADAWVRLHGELFVEFDE 224
           PPK   +L++N F   S+     R     RR  +  D W  L  E   + DE
Sbjct: 801 PPKNYEKLRNNDFNPVSSFRKGHRVISHWRRTDEMLDIWFALRYEELEDLDE 852


>U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical
           protein F41G3.3 protein.
          Length = 577

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 3   QDRWATQRLSQEGWDLLTTARAPP 74
           +D WA QR  Q+ +D +     PP
Sbjct: 104 EDHWANQRDQQDFYDTVPATNVPP 127


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
           protein C25H3.8 protein.
          Length = 2148

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 99  NCFA---NESTTGSESRPAEKIRRETQRADAWVRLHGELFVEFDEYGYRGP*ACPVLELK 269
           NCF      + +G  SRPA  +   T   ++ + L   + ++ DE        CPVL L 
Sbjct: 386 NCFPVILQHTDSGKHSRPATPV---TSSINSSLMLEAHIMMKKDE--------CPVLTLV 434

Query: 270 ASNAKVI 290
             NA+VI
Sbjct: 435 LCNARVI 441


>AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-dependent
           flavin reductase protein.
          Length = 585

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 117 STTGSESRPAEKIRRETQRADAWVRLHGELFVEFDEY 227
           S TG+    AE +RRE Q+     R+H     E DEY
Sbjct: 9   SETGTAQDIAESLRREAQQRHLQARVH-----ELDEY 40


>AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical
           protein Y113G7A.8 protein.
          Length = 585

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 117 STTGSESRPAEKIRRETQRADAWVRLHGELFVEFDEY 227
           S TG+    AE +RRE Q+     R+H     E DEY
Sbjct: 9   SETGTAQDIAESLRREAQQRHLQARVH-----ELDEY 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,268,436
Number of Sequences: 27780
Number of extensions: 99978
Number of successful extensions: 265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)