Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0889.Seq
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   7.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   7.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   9.6  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +2

Query: 2   PGQVGDAKAQPRGVGFANNCPSASEGDLTTQEQLFRE 112
           PG        P G   A N      G+LT   Q+FR+
Sbjct: 89  PGMFPALLKDPNGNVVARNGGVPQLGNLTKHLQVFRD 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 186 PMHQPAEFLAGSSQRVAIPI 127
           P+H+  +F+ GSS+R  + +
Sbjct: 242 PVHRWYKFIEGSSRRQPVQL 261


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 165 TQRADAWVRLHGELFVEFDEYGYR 236
           T  A   V++  ELF  FD+   R
Sbjct: 288 TYSASELVKILNELFARFDQLSER 311


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 81  SPSEALGQLLANPTPLG 31
           SPS  +G +   PTP G
Sbjct: 114 SPSPGMGHMGHTPTPNG 130


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 223 SSNSTKSSPCNLTHASAR*VSRRIFSAGRDSD 128
           SSNS +S   +  H S+R    R  S  R+ +
Sbjct: 213 SSNSLRSRTHDFQHTSSRYSRERSCSRDRNRE 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,781
Number of Sequences: 438
Number of extensions: 1246
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)