Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0889.Seq
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80670.1 68414.m09466 transducin family protein / WD-40 repea...    27   3.4  
At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting...    26   6.0  
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2...    26   7.9  
At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,...    26   7.9  
At1g08650.1 68414.m00960 phosphoenolpyruvate carboxylase kinase ...    26   7.9  

>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400) (1
           weak); similar to Hypothetical RAE1-like
           protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
           mRNA-associated protein mrnp 41 ((mRNA export protein)
           (GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
           [Homo sapiens]
          Length = 349

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 251 AGLGTPVTVLVELDKEFXVQPNPC--ISPLSFSP 156
           A  G P T     +K + V P+P   IS LSFSP
Sbjct: 2   ATFGAPATANSNPNKSYEVTPSPADSISSLSFSP 35


>At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 307

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 102 CFANESTTGSESRPAEKIRRETQRADAWVRLH-GELF 209
           CF +EST  ++  P +K+ +  +R D W+    G+ F
Sbjct: 232 CF-DESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFF 267


>At4g12770.1 68417.m02004 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 909

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +3

Query: 93  KSNCFANESTTGSESRPAEKIRRETQRADAWVRLHGELFVE---FDEYGYRGP 242
           +S     E +TG  + P E+I +   R      +HG +FV+    D  G  GP
Sbjct: 238 ESTSTLREPSTGGFTDPLEEIGKFNSRKTDHSSVHGGVFVDTDPLDSLGKSGP 290


>At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q60809 CCR4-NOT
           transcription complex, subunit 7 (CCR4-associated factor
           1, (CAF1) [Mus musculus]
          Length = 239

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 159 RETQRADAWVRLHGELFVEFDEYGYRGP*ACPVLELKASN--AKVIGS 296
           ++T+R   WV  HG   + +   G+ G  A PV   + S   A+V+GS
Sbjct: 117 KKTRRNITWVTFHGSYDIAYLLKGFTGE-ALPVTSERFSKAVARVLGS 163


>At1g08650.1 68414.m00960 phosphoenolpyruvate carboxylase kinase
           identical to phosphoenolpyruvate carboxylase kinase
           [Arabidopsis thaliana] gi|6318613|gb|AAF06968; contains
           protein kinase domain, Pfam:PF00069
          Length = 284

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 220 SNSTKSSPCNLTHASAR*VSRRIFSAGRDSDPVVDSFAKQLL 95
           ++ST S    L H S   +  R+ S+G   +P   SFAKQ+L
Sbjct: 85  TDSTLSIFMELVHPSVS-IYDRLVSSGTFFEPQTASFAKQIL 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,068,627
Number of Sequences: 28952
Number of extensions: 97034
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)