Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0887.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    89   4e-17
UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep: ...    31   8.8  
UniRef50_Q6K992 Cluster: Putative uncharacterized protein OJ1520...    31   8.8  
UniRef50_Q0E499 Cluster: Os02g0129100 protein; n=3; Oryza sativa...    31   8.8  
UniRef50_A2XAU4 Cluster: Putative uncharacterized protein; n=2; ...    31   8.8  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 89.0 bits (211), Expect = 4e-17
 Identities = 37/39 (94%), Positives = 38/39 (97%)
 Frame = -1

Query: 260  QEHHSGVNRLLHKPGQGKICLCFENIFDIPYHLRKNIGV 144
            + HHSGVNRLLHKPGQGKICLCFENIFDIPYHLRKNIGV
Sbjct: 1148 RSHHSGVNRLLHKPGQGKICLCFENIFDIPYHLRKNIGV 1186


>UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep:
           ORF131 - Helicoverpa zea SNPV
          Length = 192

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 99  LKHYKEYSKSCLVVLNTDILTEMVRNIEYVFE 194
           L H +  +K  +V LN D + E V+NI++VFE
Sbjct: 149 LNHLRSINKQKIVFLNGDHVEEYVQNIKHVFE 180


>UniRef50_Q6K992 Cluster: Putative uncharacterized protein
           OJ1520_C09.39; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OJ1520_C09.39 - Oryza sativa subsp. japonica (Rice)
          Length = 584

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 252 MLLETLDEVEEASDVLEPPRXKNC-LKW 332
           +L  T DEV ++SDV  PP  +NC LKW
Sbjct: 119 LLDTTSDEVMKSSDVPRPPHLENCRLKW 146


>UniRef50_Q0E499 Cluster: Os02g0129100 protein; n=3; Oryza
           sativa|Rep: Os02g0129100 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 87

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 307 RGXRTA*SGCACPDVLEVESVLLPVGARLSVWMT 408
           +G R     C+ PD ++V + L+PVG RL  W++
Sbjct: 37  KGQRDGEPSCSSPDCVQVSN-LIPVGIRLGTWVS 69


>UniRef50_A2XAU4 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 470

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 252 MLLETLDEVEEASDVLEPPRXKNC-LKW 332
           +L  T DEV ++SDV  PP  +NC LKW
Sbjct: 89  LLDTTSDEVMKSSDVPRPPHLENCRLKW 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 408,388,628
Number of Sequences: 1657284
Number of extensions: 7301281
Number of successful extensions: 14119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14118
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)