Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0887.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   2.3  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.4  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    25   5.4  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    25   7.1  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   7.1  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    24   9.4  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 153 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 52
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 243 REQTFTQAWSRKNMPLLRKHIRYSLPSP 160
           R   + +AW     P L  H +Y +P+P
Sbjct: 118 RRFIYQKAWKSYENPSLSSHRQYQIPTP 145


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 229 YTSLVKEKYAFASKTYSIFLTISVRISVFNTTKHDLEY 116
           YT L  ++    +K Y I+LT + RIS+      ++ Y
Sbjct: 389 YTGLNPQQVDVLAKQYHIYLTKNGRISISGLNTSNVRY 426


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 255 LLETLDEVEEASDVLEPPRXKNCLKWLC 338
           +++TLDE  E  +VLE    ++    LC
Sbjct: 132 IVQTLDEATEGKNVLETYEDRSTFSCLC 159


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 176 YRICFRSKGIFFLD-QACVKVCSRLNDAPG 262
           YR+C++ KGI + D Q  + V S  +++ G
Sbjct: 644 YRLCWKDKGILYQDSQIQIGVRSEYHNSEG 673


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 195 AKAYFSLTRLV*KSVHA*MMLLETLDEVEEASD 293
           AK   +  ++  KSV A  MLLE  DE+ +A D
Sbjct: 349 AKLVEAFQKMKLKSVFAEKMLLELKDELHDAVD 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,021
Number of Sequences: 5004
Number of extensions: 31793
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)