BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0887.Seq (449 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_1163 + 34615591-34615678,34615866-34616202,34616419-346165... 31 0.32 01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533... 27 7.0 >02_05_1163 + 34615591-34615678,34615866-34616202,34616419-34616582, 34616706-34616871,34617255-34617357,34617453-34617578, 34617718-34617807,34618030-34618308 Length = 450 Score = 31.5 bits (68), Expect = 0.32 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +3 Query: 252 MLLETLDEVEEASDVLEPPRXKNC-LKW 332 +L T DEV ++SDV PP +NC LKW Sbjct: 69 LLDTTSDEVMKSSDVPRPPHLENCRLKW 96 >01_06_1089 - 34451982-34452670,34452755-34452814,34453287-34453352, 34454055-34454253,34454470-34454719,34454830-34454898, 34455733-34455804,34456027-34456168,34456544-34457064, 34457166-34457739,34459164-34459269 Length = 915 Score = 27.1 bits (57), Expect = 7.0 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +3 Query: 138 VLNTDILTEMVRNIEYVFEAKAYFSLTR 221 +++TD LT +++Y+ E K Y+S TR Sbjct: 388 LVHTDNLTTSPDDVDYMKEVKKYYSYTR 415 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,989,914 Number of Sequences: 37544 Number of extensions: 202547 Number of successful extensions: 372 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 371 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 372 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 871620292 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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