Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0887.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1163 + 34615591-34615678,34615866-34616202,34616419-346165...    31   0.32 
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533...    27   7.0  

>02_05_1163 +
           34615591-34615678,34615866-34616202,34616419-34616582,
           34616706-34616871,34617255-34617357,34617453-34617578,
           34617718-34617807,34618030-34618308
          Length = 450

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 252 MLLETLDEVEEASDVLEPPRXKNC-LKW 332
           +L  T DEV ++SDV  PP  +NC LKW
Sbjct: 69  LLDTTSDEVMKSSDVPRPPHLENCRLKW 96


>01_06_1089 -
           34451982-34452670,34452755-34452814,34453287-34453352,
           34454055-34454253,34454470-34454719,34454830-34454898,
           34455733-34455804,34456027-34456168,34456544-34457064,
           34457166-34457739,34459164-34459269
          Length = 915

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 138 VLNTDILTEMVRNIEYVFEAKAYFSLTR 221
           +++TD LT    +++Y+ E K Y+S TR
Sbjct: 388 LVHTDNLTTSPDDVDYMKEVKKYYSYTR 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,989,914
Number of Sequences: 37544
Number of extensions: 202547
Number of successful extensions: 372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)