Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0887.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                29   2.3  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                29   2.3  
SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_2986| Best HMM Match : Tis11B_C (HMM E-Value=6.6)                   28   3.1  
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)               27   5.4  
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)                27   5.4  
SB_28886| Best HMM Match : efhand (HMM E-Value=4.5e-09)                27   9.5  

>SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 958

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 260 QEHHSGVNRLLHKPGQGKICLCFENIFDIPYH 165
           Q+HH  +N     P  G +C C E   D+  H
Sbjct: 115 QKHHHTLNHGCSDPAFGSVCRCAEKETDVDVH 146


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 282 PPLRLVFPGASFRREQTFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTT 124
           PPL +    AS    Q F Q   R N P+L+  + Y +P       +++ N T
Sbjct: 389 PPLNVTVLAASSTSVQAFWQRPDRINGPILKYIVTYRIPGVGHAPIVVESNQT 441


>SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 233 LLHKPGQGKICLCFENIFDIPYHLR 159
           LL  P  GKI  CF NI   P H++
Sbjct: 279 LLESPSFGKIIECFRNILASPGHIK 303


>SB_2986| Best HMM Match : Tis11B_C (HMM E-Value=6.6)
          Length = 308

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 220 LVKEKYAFASKTYSIFLTISVRISVFNTTKHDLEYS 113
           LVKE+Y + +K  ++   I    +  N  KH+L+YS
Sbjct: 56  LVKEEYEYTNKIVTLGTNICDFNNTSNLKKHELDYS 91


>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 252 SFRREQTFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 103
           S + ++++   W ++ +     H+ +    P   RC I+LN  WS PC V
Sbjct: 736 SHQSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784


>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
          Length = 825

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 110 QGILQVVFSCIKHRYSYGDGKEYRICFRSKGIFFLDQACVK 232
           Q I +  F+CIKH +   D +   +C R     F+   C +
Sbjct: 236 QAIRRYSFTCIKHSFQLSDDRFSELCTRQVIADFVPIGCYR 276


>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1446

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 249  FRREQTFTQAW--SRKNMPLLRKHIRYSLPSP*EY 151
            FRR     Q++  S  + PL RKH R SLP P ++
Sbjct: 1313 FRRRHASQQSFDSSTHSHPLSRKHHRVSLPPPGQF 1347


>SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)
          Length = 732

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 66  NRSKSLSKI*NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFSLTR 221
           NRS +LS     K Y   S++  + L T       RN+   FE K Y + +R
Sbjct: 432 NRSCNLSIDLKTKKYMNRSRNLSIELETKKNMNQSRNLSIDFETKKYMNRSR 483



 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 66  NRSKSLSKI*NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFSLTR 221
           NRS++LS     K Y   S++  + L T       RN+    E K Y + +R
Sbjct: 480 NRSRNLSIDLETKKYMNRSRNLSIDLETKKYMNRSRNLSIDLETKKYMNRSR 531


>SB_28886| Best HMM Match : efhand (HMM E-Value=4.5e-09)
          Length = 177

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 215 DQACVKVCSRLNDAPGNTRRSGGSVRCT 298
           ++ C KVC ++ D PG+ +     V CT
Sbjct: 38  NKVCDKVCDKMADKPGSCKTVCKEVGCT 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,939
Number of Sequences: 59808
Number of extensions: 238715
Number of successful extensions: 510
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)