Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0887.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    30   0.68 
U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical p...    27   6.3  
Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
           related protein 2 protein.
          Length = 1335

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 147 TDILTEMVRNIEYVFEAKAYFSLTRLV*KSVHA*MMLLETLDEVEEASDVLEPPR 311
           +D  T + R + + FEA  Y  + RL+   +HA   L E +DEV +    L  PR
Sbjct: 702 SDSATGLSRKLTWQFEANLYLDVARLMLSMLHA-WCLDEDMDEVCDKRLSLHRPR 755


>U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical
           protein C37C3.11 protein.
          Length = 161

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 107 LQGILQVVFSCIKHRYSYGDGKEYRICFRSKGIFFLDQACVK 232
           L G+L V    ++  +S  +G +Y ICF   G+    Q  VK
Sbjct: 104 LFGVLYVPLFFLQTSHSLMEGLDYFICFSLSGVLLFLQWAVK 145


>Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical
           protein Y53C12A.1 protein.
          Length = 677

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 442 RISGXGTKRXGQSSTPIXEHRQATAXIPPQARPGKHNH 329
           ++   GT R  + +     HRQ  A + P++    +NH
Sbjct: 518 KLGKRGTPRSARRNLTFNRHRQVAASVAPKSSLNHYNH 555


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,569,355
Number of Sequences: 27780
Number of extensions: 181734
Number of successful extensions: 387
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)