Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0887.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.5  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   8.2  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   8.2  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 279 EEASDVLEPPRXKNCLKWLCLP 344
           E  S+ +EPPR KN     C P
Sbjct: 332 ERRSEPVEPPRRKNNCPLHCKP 353


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 230 KVCSRLNDAP 259
           KVCS+ ND P
Sbjct: 41  KVCSKKNDTP 50


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 230 KVCSRLNDAP 259
           KVCS+ ND P
Sbjct: 15  KVCSKKNDTP 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,948
Number of Sequences: 438
Number of extensions: 2464
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)