Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0887.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    31   0.48 
At2g40330.1 68415.m04972 Bet v I allergen family protein contain...    29   1.1  
At5g02400.1 68418.m00163 protein phosphatase 2C family protein /...    28   2.5  
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica...    28   3.4  
At2g15910.1 68415.m01823 CSL zinc finger domain-containing prote...    27   4.4  
At3g09400.1 68416.m01116 protein phosphatase 2C family protein /...    27   5.9  
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ...    27   7.7  
At2g25530.1 68415.m03056 AFG1-like ATPase family protein contain...    27   7.7  

>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 397 PIXEHRQATAXIPPQARPGKHNHFRQ 320
           P+ E+R ATA  PP   P  H H R+
Sbjct: 92  PLPENRAATAGQPPSPSPDNHRHHRR 117


>At2g40330.1 68415.m04972 Bet v I allergen family protein contains
           Pfam profile PF00407: Pathogenesis-related protein Bet v
           I family
          Length = 215

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 81  LSKI*NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFSLTRL 224
           LS+  + + YK + KSC VV+        VR +  V    A FSL RL
Sbjct: 80  LSRFEHPQAYKHFVKSCHVVIGDGREVGSVREVRVVSGLPAAFSLERL 127


>At5g02400.1 68418.m00163 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 674

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 96  NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFS 212
           +L H+K  S+   ++L++D L E   N E +FE +++ S
Sbjct: 575 SLCHHKLTSRDKFLILSSDGLYEYFSNQEAIFEVESFIS 613


>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
            domain-containing protein / HNH endonuclease
            domain-containing protein similar to HepA-related protein
            HARP [Homo sapiens] GI:6693791; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain, PF01844: HNH endonuclease
          Length = 1190

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 246  RREQTFTQAWSRKNMPLLR 190
            R+E+ +TQAWS  N PL +
Sbjct: 966  RKEKEYTQAWSMSNEPLCK 984


>At2g15910.1 68415.m01823 CSL zinc finger domain-containing protein
           contains Pfam PF05207: CSL zinc finger domain
          Length = 367

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 137 CIKHRYSYGDGKEYRICFRSKGIFFLDQACVKVC 238
           C   + S GDG    I   SK  FFLDQ  +  C
Sbjct: 152 CSDTQISKGDGFTIGIAISSKEAFFLDQVQLSPC 185


>At3g09400.1 68416.m01116 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 650

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 96  NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFS 212
           +L H++  S+   ++L++D L E   N E +FE  ++ S
Sbjct: 551 SLHHHRLSSRDKFLILSSDGLYEYFSNEEAIFEVDSFIS 589


>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
            DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
            contains Pfam profiles PF00271: Helicase conserved
            C-terminal domain, PF00176: SNF2 family N-terminal
            domain, PF00249: Myb-like DNA-binding domain
          Length = 1055

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 137  CIKHRYSYGDGKEYRICFRSKGIFFLD 217
            C+ H+  YG+  E +  FR+  +F  D
Sbjct: 956  CMIHKLGYGNWDELKAAFRTSSVFRFD 982


>At2g25530.1 68415.m03056 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 655

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 236 RLLHKPGQGKICLCFENIFDIPYHLRKNI 150
           RL H P Q K+   FEN+F    H  K +
Sbjct: 124 RLQHDPYQEKVVSAFENLFGRLEHFEKQM 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,899,022
Number of Sequences: 28952
Number of extensions: 164036
Number of successful extensions: 328
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)