Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0885.Seq
         (329 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   2.5  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   4.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    20   5.8  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   7.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -1

Query: 326  YDLRKTVPGXGXGGLAEVRRAAVVLTYVGACFN 228
            + L    PG G  G  E  RAA  L Y   C N
Sbjct: 1655 HGLNAKAPGPGQAG--EYTRAAGFLAYYEICHN 1685


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = -1

Query: 254 LTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPL 78
           L ++  C N     +  WI L+TL K  ++   Q  A + + + K   +   ++    L
Sbjct: 150 LNFMLHCNNTTWRCLYRWIVLYTLSKMSQVMLIQFCAFVVVLKQKFCVVNQYIKQVCKL 208


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 201 PTEDDERDPVEARPHVREHHSSTP 272
           P EDD+ +  +  P  ++H+ + P
Sbjct: 218 PEEDDDSNIPQNNPKNKQHNFNLP 241


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 240 PHVREHHSSTP 272
           PH   HH +TP
Sbjct: 25  PHYNIHHGATP 35


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 137 ELARAKINEITAKVRAAVPLGRRAEGDKDK*TPLR 33
           ++ R K+N    ++   VP+  R+    DK + LR
Sbjct: 38  KMRRDKLNSYIGELATLVPMVARSAKRMDKTSILR 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,199
Number of Sequences: 336
Number of extensions: 572
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6367260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)