Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0885.Seq
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   1.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   1.7  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   2.2  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    24   6.8  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    23   9.0  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    23   9.0  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    23   9.0  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 248 T*APQQHAELQRVHXVLXQEQ 310
           T APQQH +LQR+  +L   Q
Sbjct: 127 TNAPQQHPQLQRMMPILSSNQ 147


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 207 EDDERDPVEARPHVREHHSST 269
           +DDER  VE   H   HH +T
Sbjct: 209 DDDERSSVEFYEHCLNHHGNT 229


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 216 ERDPVEARPHVREHHSSTPNFSEST 290
           ERD  EA  H + HH    +F + T
Sbjct: 64  ERDEAEAPHHPKGHHEFNDDFEDDT 88


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 308 VPGXGXGGLAEVRRAA 261
           V G G GGLA  RRAA
Sbjct: 12  VIGGGSGGLASARRAA 27


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 231 EARPHVREHHSSTPNFSES-TXSSTRNSLAQV 323
           + R HV   HS++   ++S T SS+ +S A V
Sbjct: 435 DKRAHVSRRHSTSRKIAQSHTGSSSTSSAANV 466


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 261 CGAHVRGGVLQRDHAHHP 208
           CGA  +GG +   + HHP
Sbjct: 232 CGAAPKGGYIGAHYWHHP 249


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 249 REHHSSTPNFSESTXSSTRNSLAQV 323
           RE  SSTP+   ++ + T NSL+ +
Sbjct: 362 RERTSSTPSEQSTSVNETANSLSNL 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 795,645
Number of Sequences: 5004
Number of extensions: 9629
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)