BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0885.Seq (329 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696... 38 0.002 05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741... 38 0.003 01_01_0255 + 2079112-2079196,2079334-2079514,2079712-2079853,207... 37 0.003 03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 34 0.031 01_06_0631 + 30732091-30732292,30732690-30732870,30732994-307331... 34 0.031 03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894... 31 0.22 06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 31 0.29 05_07_0022 - 27103367-27103533,27103783-27103852,27104074-271042... 29 0.67 01_06_0336 + 28533251-28533350,28533548-28533641,28533760-285339... 29 0.89 04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 28 2.0 07_01_0130 - 963856-965454 27 3.6 03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 27 3.6 04_01_0076 - 858725-859321 27 4.7 03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849... 26 6.2 01_05_0522 - 22910849-22911399,22911797-22912181 26 6.2 >01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365, 6968448-6968517,6968617-6968783 Length = 279 Score = 37.9 bits (84), Expect = 0.002 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%) Frame = -1 Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINE----ITAKVRA 90 +L+ +G+C N +TL+ + ++ L T+P YE + Q+D+ E +I + + AKV + Sbjct: 208 LLSVLGSCCNFLTLVYIVFVVLHTVPILYEKYEDQIDSYGEKGWVEIKKQYAVLDAKVLS 267 Query: 89 AVPLG 75 VP G Sbjct: 268 KVPRG 272 >05_06_0144 - 25973635-25973801,25973878-25973947,25974049-25974190, 25974647-25974827,25975248-25975443 Length = 251 Score = 37.5 bits (83), Expect = 0.003 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -1 Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITA 102 VL+ +G+C N +TL + ++ L+T+P YE + Q+DA E A ++ + A Sbjct: 180 VLSVLGSCCNFLTLFYIVFMVLYTVPVLYEKYEDQIDAFGEKAMIELKKYYA 231 >01_01_0255 + 2079112-2079196,2079334-2079514,2079712-2079853, 2079934-2080003,2080140-2080303 Length = 213 Score = 37.1 bits (82), Expect = 0.003 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Frame = -1 Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELA----RAKINEITAKVRA 90 + + + +CF+ +TL+ L + TLP YE +++VD + A R+ + +I + V Sbjct: 143 IASVIASCFSSLTLLYLVVLGTMTLPVMYENYESEVDHLVSTAVHDLRSHVGDIDSGVFK 202 Query: 89 AVPLGRRA 66 +P GR A Sbjct: 203 KIPRGRGA 210 >03_02_0927 - 12452262-12452428,12452538-12452607,12452689-12452830, 12452937-12453117,12454068-12454203 Length = 231 Score = 33.9 bits (74), Expect = 0.031 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -1 Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 147 +L+ +G + ITL G IAL T+P Y N+ QVD Sbjct: 160 LLSVIGNFCSSITLAYFGTIALVTIPALYSKNQEQVD 196 >01_06_0631 + 30732091-30732292,30732690-30732870,30732994-30733135, 30733228-30733297,30733383-30733549 Length = 253 Score = 33.9 bits (74), Expect = 0.031 Identities = 17/52 (32%), Positives = 31/52 (59%) Frame = -1 Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITA 102 +L+ +G+ N +TL + ++AL+T+P YE + +VDA E A + + A Sbjct: 182 ILSVLGSSCNFLTLFYIVFVALYTVPVLYEKYEDKVDAFGEKAEIEFKKYYA 233 >03_06_0184 - 32188778-32188947,32189104-32189173,32189332-32189473, 32189559-32189739,32189857-32190051,32190782-32190795, 32190815-32190864,32191493-32191519 Length = 282 Score = 31.1 bits (67), Expect = 0.22 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = -1 Query: 245 VGACFNGITLIILGWIALFTLPKAYEMNKAQVD----ANLELARAKINEITAKVRAAVPL 78 +G N +T+I +G+++ TLP YE + QVD L L R + ++ V + +P Sbjct: 214 IGGWCNFLTVIYIGFVSAHTLPVLYEKYEDQVDDFLYNILGLLRDQYQKLDQGVLSKIPK 273 Query: 77 G 75 G Sbjct: 274 G 274 >06_03_0181 + 17618888-17619125,17621503-17621683,17621765-17621906, 17622002-17622071,17622162-17622307,17623382-17623948, 17624558-17624641,17624723-17624797,17625049-17625217, 17625395-17625586,17625662-17626053 Length = 751 Score = 30.7 bits (66), Expect = 0.29 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Frame = -1 Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAK----INEITAKVRA 90 VL+ VG+C + +TLI + + L T+P Y+ + +VD A ++ + AKV + Sbjct: 194 VLSEVGSCCDFLTLIYVAVLMLHTVPILYDKYQDKVDHFAGRAHSEACKHYEVLDAKVLS 253 Query: 89 AVPLG 75 +P G Sbjct: 254 KIPRG 258 >05_07_0022 - 27103367-27103533,27103783-27103852,27104074-27104215, 27104372-27104552,27104654-27104756 Length = 220 Score = 29.5 bits (63), Expect = 0.67 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -1 Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 147 +L +G + TL+ +G++ TLP YE + +VD Sbjct: 149 ILAVIGETCSFTTLLYVGFLCALTLPALYERYETEVD 185 >01_06_0336 + 28533251-28533350,28533548-28533641,28533760-28533901, 28534107-28534212,28534345-28534511 Length = 202 Score = 29.1 bits (62), Expect = 0.89 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = -1 Query: 260 VVLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 147 +VL+ +G+ + +L+ +G++ TLP Y+ K +VD Sbjct: 130 LVLSAIGSSCSLTSLLYIGFLCAHTLPVLYQRYKTEVD 167 >04_04_1534 + 34200538-34200589,34200677-34200857,34201701-34201842, 34201963-34202032,34202169-34202302 Length = 192 Score = 27.9 bits (59), Expect = 2.0 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = -1 Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKIN 114 V++Y+G FN +TLI + +P YE + QVD + +A + ++ Sbjct: 132 VVSYIGMLFNFLTLI-------YIVPPLYEKYQDQVDEKIGMAHSVLS 172 >07_01_0130 - 963856-965454 Length = 532 Score = 27.1 bits (57), Expect = 3.6 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = -1 Query: 191 FTLPKAYE---MNKAQVDANLELARAKINEITAKVRAAVPLGRRAEGDK 54 F P+A+E M++ + LA +K N +AK RA +P+G R GD+ Sbjct: 96 FRFPEAHEEEIMSENNDKVSYSLALSKFN--SAK-RARIPIGTRRHGDR 141 >03_06_0520 - 34487664-34488274,34488785-34488974,34489585-34491045, 34491149-34491163 Length = 758 Score = 27.1 bits (57), Expect = 3.6 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +3 Query: 201 PTEDDERDPVEARPHVRE-HHSSTPNFSESTXSS 299 PT+DD R+ AR H E H SS P++ + +S Sbjct: 413 PTQDDLRNASCARYHTLEQHRSSFPSYDNTRNNS 446 >04_01_0076 - 858725-859321 Length = 198 Score = 26.6 bits (56), Expect = 4.7 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Frame = +3 Query: 93 AHLGG----DLV-DLGARQLEXXXXXXXXXXXXXXQREQRYPTEDDERD-PVEARPHVRE 254 AHLGG +LV ++GAR R P E+ RD P EA P E Sbjct: 125 AHLGGAALTELVKEMGARGGGGVVAGAEDHRRGEVPAGARRPDEEGGRDVPAEAVPTGDE 184 Query: 255 HHSSTP 272 HH+ P Sbjct: 185 HHAGQP 190 >03_05_1138 + 30684014-30684386,30684480-30684865,30684870-30684962, 30684963-30685108,30685211-30685454,30685562-30685666, 30685774-30685956,30686052-30686738 Length = 738 Score = 26.2 bits (55), Expect = 6.2 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -1 Query: 302 GXGXGGLAEVRRAAVVLTYVGACFNGITLIILGWIA 195 G G GG R + VL + CF G +++L W A Sbjct: 3 GNGGGGGGR-RHCSGVLESLEGCFTGFLIVLLEWHA 37 >01_05_0522 - 22910849-22911399,22911797-22912181 Length = 311 Score = 26.2 bits (55), Expect = 6.2 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -1 Query: 137 ELARAKINEITAKVRAAVPLGRRAEGDK 54 E+ R +N+I A R V RAE DK Sbjct: 180 EVVRRAMNDINAAARLRVAAAERAEADK 207 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,678,122 Number of Sequences: 37544 Number of extensions: 73307 Number of successful extensions: 336 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 333 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 336 length of database: 14,793,348 effective HSP length: 72 effective length of database: 12,090,180 effective search space used: 447336660 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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