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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0885.Seq
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696...    38   0.002
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741...    38   0.003
01_01_0255 + 2079112-2079196,2079334-2079514,2079712-2079853,207...    37   0.003
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528...    34   0.031
01_06_0631 + 30732091-30732292,30732690-30732870,30732994-307331...    34   0.031
03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894...    31   0.22 
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219...    31   0.29 
05_07_0022 - 27103367-27103533,27103783-27103852,27104074-271042...    29   0.67 
01_06_0336 + 28533251-28533350,28533548-28533641,28533760-285339...    29   0.89 
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018...    28   2.0  
07_01_0130 - 963856-965454                                             27   3.6  
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910...    27   3.6  
04_01_0076 - 858725-859321                                             27   4.7  
03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849...    26   6.2  
01_05_0522 - 22910849-22911399,22911797-22912181                       26   6.2  

>01_01_0885 +
           6966700-6966979,6967930-6968110,6968224-6968365,
           6968448-6968517,6968617-6968783
          Length = 279

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = -1

Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINE----ITAKVRA 90
           +L+ +G+C N +TL+ + ++ L T+P  YE  + Q+D+  E    +I +    + AKV +
Sbjct: 208 LLSVLGSCCNFLTLVYIVFVVLHTVPILYEKYEDQIDSYGEKGWVEIKKQYAVLDAKVLS 267

Query: 89  AVPLG 75
            VP G
Sbjct: 268 KVPRG 272


>05_06_0144 -
           25973635-25973801,25973878-25973947,25974049-25974190,
           25974647-25974827,25975248-25975443
          Length = 251

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 18/52 (34%), Positives = 32/52 (61%)
 Frame = -1

Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITA 102
           VL+ +G+C N +TL  + ++ L+T+P  YE  + Q+DA  E A  ++ +  A
Sbjct: 180 VLSVLGSCCNFLTLFYIVFMVLYTVPVLYEKYEDQIDAFGEKAMIELKKYYA 231


>01_01_0255 +
           2079112-2079196,2079334-2079514,2079712-2079853,
           2079934-2080003,2080140-2080303
          Length = 213

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
 Frame = -1

Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELA----RAKINEITAKVRA 90
           + + + +CF+ +TL+ L  +   TLP  YE  +++VD  +  A    R+ + +I + V  
Sbjct: 143 IASVIASCFSSLTLLYLVVLGTMTLPVMYENYESEVDHLVSTAVHDLRSHVGDIDSGVFK 202

Query: 89  AVPLGRRA 66
            +P GR A
Sbjct: 203 KIPRGRGA 210


>03_02_0927 -
           12452262-12452428,12452538-12452607,12452689-12452830,
           12452937-12453117,12454068-12454203
          Length = 231

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 147
           +L+ +G   + ITL   G IAL T+P  Y  N+ QVD
Sbjct: 160 LLSVIGNFCSSITLAYFGTIALVTIPALYSKNQEQVD 196


>01_06_0631 +
           30732091-30732292,30732690-30732870,30732994-30733135,
           30733228-30733297,30733383-30733549
          Length = 253

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = -1

Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITA 102
           +L+ +G+  N +TL  + ++AL+T+P  YE  + +VDA  E A  +  +  A
Sbjct: 182 ILSVLGSSCNFLTLFYIVFVALYTVPVLYEKYEDKVDAFGEKAEIEFKKYYA 233


>03_06_0184 -
           32188778-32188947,32189104-32189173,32189332-32189473,
           32189559-32189739,32189857-32190051,32190782-32190795,
           32190815-32190864,32191493-32191519
          Length = 282

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -1

Query: 245 VGACFNGITLIILGWIALFTLPKAYEMNKAQVD----ANLELARAKINEITAKVRAAVPL 78
           +G   N +T+I +G+++  TLP  YE  + QVD      L L R +  ++   V + +P 
Sbjct: 214 IGGWCNFLTVIYIGFVSAHTLPVLYEKYEDQVDDFLYNILGLLRDQYQKLDQGVLSKIPK 273

Query: 77  G 75
           G
Sbjct: 274 G 274


>06_03_0181 +
           17618888-17619125,17621503-17621683,17621765-17621906,
           17622002-17622071,17622162-17622307,17623382-17623948,
           17624558-17624641,17624723-17624797,17625049-17625217,
           17625395-17625586,17625662-17626053
          Length = 751

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = -1

Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAK----INEITAKVRA 90
           VL+ VG+C + +TLI +  + L T+P  Y+  + +VD     A ++       + AKV +
Sbjct: 194 VLSEVGSCCDFLTLIYVAVLMLHTVPILYDKYQDKVDHFAGRAHSEACKHYEVLDAKVLS 253

Query: 89  AVPLG 75
            +P G
Sbjct: 254 KIPRG 258


>05_07_0022 -
           27103367-27103533,27103783-27103852,27104074-27104215,
           27104372-27104552,27104654-27104756
          Length = 220

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 147
           +L  +G   +  TL+ +G++   TLP  YE  + +VD
Sbjct: 149 ILAVIGETCSFTTLLYVGFLCALTLPALYERYETEVD 185


>01_06_0336 +
           28533251-28533350,28533548-28533641,28533760-28533901,
           28534107-28534212,28534345-28534511
          Length = 202

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -1

Query: 260 VVLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 147
           +VL+ +G+  +  +L+ +G++   TLP  Y+  K +VD
Sbjct: 130 LVLSAIGSSCSLTSLLYIGFLCAHTLPVLYQRYKTEVD 167


>04_04_1534 +
           34200538-34200589,34200677-34200857,34201701-34201842,
           34201963-34202032,34202169-34202302
          Length = 192

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKIN 114
           V++Y+G  FN +TLI       + +P  YE  + QVD  + +A + ++
Sbjct: 132 VVSYIGMLFNFLTLI-------YIVPPLYEKYQDQVDEKIGMAHSVLS 172


>07_01_0130 - 963856-965454
          Length = 532

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -1

Query: 191 FTLPKAYE---MNKAQVDANLELARAKINEITAKVRAAVPLGRRAEGDK 54
           F  P+A+E   M++     +  LA +K N  +AK RA +P+G R  GD+
Sbjct: 96  FRFPEAHEEEIMSENNDKVSYSLALSKFN--SAK-RARIPIGTRRHGDR 141


>03_06_0520 -
           34487664-34488274,34488785-34488974,34489585-34491045,
           34491149-34491163
          Length = 758

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 201 PTEDDERDPVEARPHVRE-HHSSTPNFSESTXSS 299
           PT+DD R+   AR H  E H SS P++  +  +S
Sbjct: 413 PTQDDLRNASCARYHTLEQHRSSFPSYDNTRNNS 446


>04_01_0076 - 858725-859321
          Length = 198

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = +3

Query: 93  AHLGG----DLV-DLGARQLEXXXXXXXXXXXXXXQREQRYPTEDDERD-PVEARPHVRE 254
           AHLGG    +LV ++GAR                     R P E+  RD P EA P   E
Sbjct: 125 AHLGGAALTELVKEMGARGGGGVVAGAEDHRRGEVPAGARRPDEEGGRDVPAEAVPTGDE 184

Query: 255 HHSSTP 272
           HH+  P
Sbjct: 185 HHAGQP 190


>03_05_1138 +
           30684014-30684386,30684480-30684865,30684870-30684962,
           30684963-30685108,30685211-30685454,30685562-30685666,
           30685774-30685956,30686052-30686738
          Length = 738

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 302 GXGXGGLAEVRRAAVVLTYVGACFNGITLIILGWIA 195
           G G GG    R  + VL  +  CF G  +++L W A
Sbjct: 3   GNGGGGGGR-RHCSGVLESLEGCFTGFLIVLLEWHA 37


>01_05_0522 - 22910849-22911399,22911797-22912181
          Length = 311

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 137 ELARAKINEITAKVRAAVPLGRRAEGDK 54
           E+ R  +N+I A  R  V    RAE DK
Sbjct: 180 EVVRRAMNDINAAARLRVAAAERAEADK 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,678,122
Number of Sequences: 37544
Number of extensions: 73307
Number of successful extensions: 336
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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