Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0885.Seq
(329 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696... 38 0.002
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741... 38 0.003
01_01_0255 + 2079112-2079196,2079334-2079514,2079712-2079853,207... 37 0.003
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 34 0.031
01_06_0631 + 30732091-30732292,30732690-30732870,30732994-307331... 34 0.031
03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894... 31 0.22
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 31 0.29
05_07_0022 - 27103367-27103533,27103783-27103852,27104074-271042... 29 0.67
01_06_0336 + 28533251-28533350,28533548-28533641,28533760-285339... 29 0.89
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 28 2.0
07_01_0130 - 963856-965454 27 3.6
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 27 3.6
04_01_0076 - 858725-859321 27 4.7
03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849... 26 6.2
01_05_0522 - 22910849-22911399,22911797-22912181 26 6.2
>01_01_0885 +
6966700-6966979,6967930-6968110,6968224-6968365,
6968448-6968517,6968617-6968783
Length = 279
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -1
Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINE----ITAKVRA 90
+L+ +G+C N +TL+ + ++ L T+P YE + Q+D+ E +I + + AKV +
Sbjct: 208 LLSVLGSCCNFLTLVYIVFVVLHTVPILYEKYEDQIDSYGEKGWVEIKKQYAVLDAKVLS 267
Query: 89 AVPLG 75
VP G
Sbjct: 268 KVPRG 272
>05_06_0144 -
25973635-25973801,25973878-25973947,25974049-25974190,
25974647-25974827,25975248-25975443
Length = 251
Score = 37.5 bits (83), Expect = 0.003
Identities = 18/52 (34%), Positives = 32/52 (61%)
Frame = -1
Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITA 102
VL+ +G+C N +TL + ++ L+T+P YE + Q+DA E A ++ + A
Sbjct: 180 VLSVLGSCCNFLTLFYIVFMVLYTVPVLYEKYEDQIDAFGEKAMIELKKYYA 231
>01_01_0255 +
2079112-2079196,2079334-2079514,2079712-2079853,
2079934-2080003,2080140-2080303
Length = 213
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = -1
Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELA----RAKINEITAKVRA 90
+ + + +CF+ +TL+ L + TLP YE +++VD + A R+ + +I + V
Sbjct: 143 IASVIASCFSSLTLLYLVVLGTMTLPVMYENYESEVDHLVSTAVHDLRSHVGDIDSGVFK 202
Query: 89 AVPLGRRA 66
+P GR A
Sbjct: 203 KIPRGRGA 210
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 33.9 bits (74), Expect = 0.031
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -1
Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 147
+L+ +G + ITL G IAL T+P Y N+ QVD
Sbjct: 160 LLSVIGNFCSSITLAYFGTIALVTIPALYSKNQEQVD 196
>01_06_0631 +
30732091-30732292,30732690-30732870,30732994-30733135,
30733228-30733297,30733383-30733549
Length = 253
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = -1
Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITA 102
+L+ +G+ N +TL + ++AL+T+P YE + +VDA E A + + A
Sbjct: 182 ILSVLGSSCNFLTLFYIVFVALYTVPVLYEKYEDKVDAFGEKAEIEFKKYYA 233
>03_06_0184 -
32188778-32188947,32189104-32189173,32189332-32189473,
32189559-32189739,32189857-32190051,32190782-32190795,
32190815-32190864,32191493-32191519
Length = 282
Score = 31.1 bits (67), Expect = 0.22
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -1
Query: 245 VGACFNGITLIILGWIALFTLPKAYEMNKAQVD----ANLELARAKINEITAKVRAAVPL 78
+G N +T+I +G+++ TLP YE + QVD L L R + ++ V + +P
Sbjct: 214 IGGWCNFLTVIYIGFVSAHTLPVLYEKYEDQVDDFLYNILGLLRDQYQKLDQGVLSKIPK 273
Query: 77 G 75
G
Sbjct: 274 G 274
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 30.7 bits (66), Expect = 0.29
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = -1
Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAK----INEITAKVRA 90
VL+ VG+C + +TLI + + L T+P Y+ + +VD A ++ + AKV +
Sbjct: 194 VLSEVGSCCDFLTLIYVAVLMLHTVPILYDKYQDKVDHFAGRAHSEACKHYEVLDAKVLS 253
Query: 89 AVPLG 75
+P G
Sbjct: 254 KIPRG 258
>05_07_0022 -
27103367-27103533,27103783-27103852,27104074-27104215,
27104372-27104552,27104654-27104756
Length = 220
Score = 29.5 bits (63), Expect = 0.67
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 147
+L +G + TL+ +G++ TLP YE + +VD
Sbjct: 149 ILAVIGETCSFTTLLYVGFLCALTLPALYERYETEVD 185
>01_06_0336 +
28533251-28533350,28533548-28533641,28533760-28533901,
28534107-28534212,28534345-28534511
Length = 202
Score = 29.1 bits (62), Expect = 0.89
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -1
Query: 260 VVLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 147
+VL+ +G+ + +L+ +G++ TLP Y+ K +VD
Sbjct: 130 LVLSAIGSSCSLTSLLYIGFLCAHTLPVLYQRYKTEVD 167
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKIN 114
V++Y+G FN +TLI + +P YE + QVD + +A + ++
Sbjct: 132 VVSYIGMLFNFLTLI-------YIVPPLYEKYQDQVDEKIGMAHSVLS 172
>07_01_0130 - 963856-965454
Length = 532
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -1
Query: 191 FTLPKAYE---MNKAQVDANLELARAKINEITAKVRAAVPLGRRAEGDK 54
F P+A+E M++ + LA +K N +AK RA +P+G R GD+
Sbjct: 96 FRFPEAHEEEIMSENNDKVSYSLALSKFN--SAK-RARIPIGTRRHGDR 141
>03_06_0520 -
34487664-34488274,34488785-34488974,34489585-34491045,
34491149-34491163
Length = 758
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 201 PTEDDERDPVEARPHVRE-HHSSTPNFSESTXSS 299
PT+DD R+ AR H E H SS P++ + +S
Sbjct: 413 PTQDDLRNASCARYHTLEQHRSSFPSYDNTRNNS 446
>04_01_0076 - 858725-859321
Length = 198
Score = 26.6 bits (56), Expect = 4.7
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Frame = +3
Query: 93 AHLGG----DLV-DLGARQLEXXXXXXXXXXXXXXQREQRYPTEDDERD-PVEARPHVRE 254
AHLGG +LV ++GAR R P E+ RD P EA P E
Sbjct: 125 AHLGGAALTELVKEMGARGGGGVVAGAEDHRRGEVPAGARRPDEEGGRDVPAEAVPTGDE 184
Query: 255 HHSSTP 272
HH+ P
Sbjct: 185 HHAGQP 190
>03_05_1138 +
30684014-30684386,30684480-30684865,30684870-30684962,
30684963-30685108,30685211-30685454,30685562-30685666,
30685774-30685956,30686052-30686738
Length = 738
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 302 GXGXGGLAEVRRAAVVLTYVGACFNGITLIILGWIA 195
G G GG R + VL + CF G +++L W A
Sbjct: 3 GNGGGGGGR-RHCSGVLESLEGCFTGFLIVLLEWHA 37
>01_05_0522 - 22910849-22911399,22911797-22912181
Length = 311
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 137 ELARAKINEITAKVRAAVPLGRRAEGDK 54
E+ R +N+I A R V RAE DK
Sbjct: 180 EVVRRAMNDINAAARLRVAAAERAEADK 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,678,122
Number of Sequences: 37544
Number of extensions: 73307
Number of successful extensions: 336
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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