Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0885.Seq
         (329 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)             46   1e-05
SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8)                   27   2.8  
SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44)      27   3.7  
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 26   6.5  
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             26   6.5  
SB_39183| Best HMM Match : LEA_4 (HMM E-Value=2.7)                     26   8.5  
SB_59750| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  

>SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)
          Length = 142

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 17/38 (44%), Positives = 30/38 (78%)
 Frame = -1

Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDA 144
           +L+Y+   F+GITL  +G+I LFT+PKAY+M + ++++
Sbjct: 54  ILSYLAQWFSGITLTFIGFIGLFTVPKAYDMYREEINS 91



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -2

Query: 313 RLFLVEDXVDSLKFGVLLW 257
           RLFLVED  DS+K  V+L+
Sbjct: 35  RLFLVEDLADSIKLLVVLY 53


>SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8)
          Length = 996

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 183 QREQRYPTEDDERDPVEARPHVREHHSSTP 272
           +++ R P  +++ D  ++  ++R HHS  P
Sbjct: 432 RKDDRIPEHENQHDTTQSCHNIRTHHSGAP 461


>SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44)
          Length = 933

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 272 RRAAVVLTYVGACFNGITLIILGWIALFTLP 180
           R++   +  VGA F+G+T+ I     LF +P
Sbjct: 102 RKSRHTVAIVGAAFSGVTMAIASLAGLFYIP 132


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 121 LARASSRLASTCALFIS*AFGSVNSAIQPRMMSVIPLKHAP 243
           +A  + R    CALF   +F S    +QP   S  P K +P
Sbjct: 388 VANVTGRADVQCALFYLLSFLSFTKCVQPSRTSNSPSKKSP 428


>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = -2

Query: 328 CMTCA--RLFLVEDXVDSLK 275
           C+T +  RLFLVED VDS+K
Sbjct: 469 CLTKSLRRLFLVEDIVDSIK 488


>SB_39183| Best HMM Match : LEA_4 (HMM E-Value=2.7)
          Length = 300

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 186 REQRYPTEDDERDPVEARPHVREHHSSTPNFSESTXSSTRNSLAQ 320
           RE RY T DD R  +    H R+    T   +  T   TR+ + +
Sbjct: 165 RETRY-TRDDTRGKIYKGRHARQDIQGTKREARYTRDDTRDKICK 208


>SB_59750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 225 PVEARPHVREHHSSTPNFSESTXSSTRNSLAQVIQ 329
           PV A PH+  H   TPN   ST    ++   QVI+
Sbjct: 394 PVGA-PHLSAHPPQTPNAPASTGGDAQSFRLQVIR 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,372,563
Number of Sequences: 59808
Number of extensions: 81878
Number of successful extensions: 268
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)