BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0885.Seq (329 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05) 46 1e-05 SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8) 27 2.8 SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44) 27 3.7 SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 26 6.5 SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16) 26 6.5 SB_39183| Best HMM Match : LEA_4 (HMM E-Value=2.7) 26 8.5 SB_59750| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5 >SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05) Length = 142 Score = 45.6 bits (103), Expect = 1e-05 Identities = 17/38 (44%), Positives = 30/38 (78%) Frame = -1 Query: 257 VLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDA 144 +L+Y+ F+GITL +G+I LFT+PKAY+M + ++++ Sbjct: 54 ILSYLAQWFSGITLTFIGFIGLFTVPKAYDMYREEINS 91 Score = 27.1 bits (57), Expect = 3.7 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -2 Query: 313 RLFLVEDXVDSLKFGVLLW 257 RLFLVED DS+K V+L+ Sbjct: 35 RLFLVEDLADSIKLLVVLY 53 >SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8) Length = 996 Score = 27.5 bits (58), Expect = 2.8 Identities = 8/30 (26%), Positives = 18/30 (60%) Frame = +3 Query: 183 QREQRYPTEDDERDPVEARPHVREHHSSTP 272 +++ R P +++ D ++ ++R HHS P Sbjct: 432 RKDDRIPEHENQHDTTQSCHNIRTHHSGAP 461 >SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44) Length = 933 Score = 27.1 bits (57), Expect = 3.7 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -1 Query: 272 RRAAVVLTYVGACFNGITLIILGWIALFTLP 180 R++ + VGA F+G+T+ I LF +P Sbjct: 102 RKSRHTVAIVGAAFSGVTMAIASLAGLFYIP 132 >SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) Length = 884 Score = 26.2 bits (55), Expect = 6.5 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +1 Query: 121 LARASSRLASTCALFIS*AFGSVNSAIQPRMMSVIPLKHAP 243 +A + R CALF +F S +QP S P K +P Sbjct: 388 VANVTGRADVQCALFYLLSFLSFTKCVQPSRTSNSPSKKSP 428 >SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16) Length = 621 Score = 26.2 bits (55), Expect = 6.5 Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 2/20 (10%) Frame = -2 Query: 328 CMTCA--RLFLVEDXVDSLK 275 C+T + RLFLVED VDS+K Sbjct: 469 CLTKSLRRLFLVEDIVDSIK 488 >SB_39183| Best HMM Match : LEA_4 (HMM E-Value=2.7) Length = 300 Score = 25.8 bits (54), Expect = 8.5 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = +3 Query: 186 REQRYPTEDDERDPVEARPHVREHHSSTPNFSESTXSSTRNSLAQ 320 RE RY T DD R + H R+ T + T TR+ + + Sbjct: 165 RETRY-TRDDTRGKIYKGRHARQDIQGTKREARYTRDDTRDKICK 208 >SB_59750| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 607 Score = 25.8 bits (54), Expect = 8.5 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +3 Query: 225 PVEARPHVREHHSSTPNFSESTXSSTRNSLAQVIQ 329 PV A PH+ H TPN ST ++ QVI+ Sbjct: 394 PVGA-PHLSAHPPQTPNAPASTGGDAQSFRLQVIR 427 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,372,563 Number of Sequences: 59808 Number of extensions: 81878 Number of successful extensions: 268 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 263 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 268 length of database: 16,821,457 effective HSP length: 72 effective length of database: 12,515,281 effective search space used: 463065397 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -