Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0885.Seq
(329 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 48 2e-06
Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical pr... 48 2e-06
Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical pr... 48 2e-06
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 48 2e-06
Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical pr... 48 2e-06
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 48 2e-06
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 31 0.15
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 31 0.15
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 31 0.15
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.15
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.15
AL034393-6|CAA22321.1| 507|Caenorhabditis elegans Hypothetical ... 29 1.0
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 27 2.4
Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical pr... 27 3.2
AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical ... 27 3.2
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 27 3.2
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 26 5.5
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 26 5.5
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 26 5.5
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 26 5.5
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 26 5.5
AF022985-3|AAB69970.1| 355|Caenorhabditis elegans Hypothetical ... 25 9.7
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = -1
Query: 254 LTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLG 75
LTY+ + F+G TL ILG + +F++PK YE N+ +D +L + + + +P
Sbjct: 2416 LTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFL 2475
Query: 74 RRA 66
R A
Sbjct: 2476 RSA 2478
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 313 RLFLVEDXVDSLKFGVLLW 257
+L VE ++S+KFG++LW
Sbjct: 2396 KLVFVESPLESIKFGLVLW 2414
>Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical
protein W06A7.3e protein.
Length = 204
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = -1
Query: 254 LTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLG 75
LTY+ + F+G TL ILG + +F++PK YE N+ +D +L + + + +P
Sbjct: 132 LTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFL 191
Query: 74 RRA 66
R A
Sbjct: 192 RSA 194
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 313 RLFLVEDXVDSLKFGVLLW 257
+L VE ++S+KFG++LW
Sbjct: 112 KLVFVESPLESIKFGLVLW 130
>Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical
protein W06A7.3d protein.
Length = 570
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = -1
Query: 254 LTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLG 75
LTY+ + F+G TL ILG + +F++PK YE N+ +D +L + + + +P
Sbjct: 498 LTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFL 557
Query: 74 RRA 66
R A
Sbjct: 558 RSA 560
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 313 RLFLVEDXVDSLKFGVLLW 257
+L VE ++S+KFG++LW
Sbjct: 478 KLVFVESPLESIKFGLVLW 496
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = -1
Query: 254 LTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLG 75
LTY+ + F+G TL ILG + +F++PK YE N+ +D +L + + + +P
Sbjct: 2412 LTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFL 2471
Query: 74 RRA 66
R A
Sbjct: 2472 RSA 2474
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 313 RLFLVEDXVDSLKFGVLLW 257
+L VE ++S+KFG++LW
Sbjct: 2392 KLVFVESPLESIKFGLVLW 2410
>Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical
protein W06A7.3b protein.
Length = 222
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = -1
Query: 254 LTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLG 75
LTY+ + F+G TL ILG + +F++PK YE N+ +D +L + + + +P
Sbjct: 150 LTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFL 209
Query: 74 RRA 66
R A
Sbjct: 210 RSA 212
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 313 RLFLVEDXVDSLKFGVLLW 257
+L VE ++S+KFG++LW
Sbjct: 130 KLVFVESPLESIKFGLVLW 148
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = -1
Query: 254 LTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLG 75
LTY+ + F+G TL ILG + +F++PK YE N+ +D +L + + + +P
Sbjct: 2535 LTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFL 2594
Query: 74 RRA 66
R A
Sbjct: 2595 RSA 2597
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 313 RLFLVEDXVDSLKFGVLLW 257
+L VE ++S+KFG++LW
Sbjct: 2515 KLVFVESPLESIKFGLVLW 2533
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1
Query: 170 EMNKAQVDANLELARAKINEITAK 99
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1
Query: 170 EMNKAQVDANLELARAKINEITAK 99
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1
Query: 170 EMNKAQVDANLELARAKINEITAK 99
E KA++DAN+E RAKI+EI K
Sbjct: 407 EKLKAEIDANIEETRAKISEIAGK 430
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1
Query: 170 EMNKAQVDANLELARAKINEITAK 99
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1
Query: 170 EMNKAQVDANLELARAKINEITAK 99
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>AL034393-6|CAA22321.1| 507|Caenorhabditis elegans Hypothetical
protein Y18D10A.8 protein.
Length = 507
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 204 TEDDERDPVEARPHVREHHSSTPNFSESTXSSTRNSLAQVIQ 329
T D+++PV +P + H STPN ++ ++T +A + Q
Sbjct: 417 TARDQQEPVMLKP-AKTFHGSTPNLADGLAATTTVVVASIPQ 457
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 183 QREQRYPTEDDERDPVEARPHVREHHSSTPNFSESTXSSTRNS 311
+R+QR P+ + + P + R R H S+ N ST ++++ S
Sbjct: 314 RRQQRSPSVERRKSP-QRRDERRRRHDSSENERRSTATASKKS 355
>Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical
protein F36G3.1 protein.
Length = 964
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +3
Query: 189 EQRYPTEDDERDPVEARPHVREHHSSTPNFSESTXSSTRNSLAQVIQ 329
E+ Y ED+ + P++ E SS S+S T + ++++ +
Sbjct: 169 EETYSEEDERQTPIQMENATSEVSSSEDEISDSVVELTNDMMSKITE 215
>AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical
protein M4.1 protein.
Length = 554
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -1
Query: 206 GWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRA 90
GW++L PK++ + ++ N KI A+++A
Sbjct: 4 GWVSLVATPKSHPFEERRIKVNGSNDPVKIGRAVARIQA 42
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 263 AVVLTYVGACFNGITLIILGWIALFTLP 180
AV + YVGAC G +++ ++ +F LP
Sbjct: 430 AVSIAYVGACIFGDEGLVVTFMPMFVLP 457
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 198 YPTEDDERDPVEARPHVREHHSSTPNFSESTXSS 299
Y T+DD+ E+RP R S++P S +T SS
Sbjct: 382 YSTDDDDDSSPESRPSTR---STSPRHSLATPSS 412
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 198 YPTEDDERDPVEARPHVREHHSSTPNFSESTXSS 299
Y T+DD+ E+RP R S++P S +T SS
Sbjct: 457 YSTDDDDDSSPESRPSTR---STSPRHSLATPSS 487
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 198 YPTEDDERDPVEARPHVREHHSSTPNFSESTXSS 299
Y T+DD+ E+RP R S++P S +T SS
Sbjct: 391 YSTDDDDDSSPESRPSTR---STSPRHSLATPSS 421
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 198 YPTEDDERDPVEARPHVREHHSSTPNFSESTXSS 299
Y T+DD+ E+RP R S++P S +T SS
Sbjct: 535 YSTDDDDDSSPESRPSTR---STSPRHSLATPSS 565
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 198 YPTEDDERDPVEARPHVREHHSSTPNFSESTXSS 299
Y T+DD+ E+RP R S++P S +T SS
Sbjct: 382 YSTDDDDDSSPESRPSTR---STSPRHSLATPSS 412
>AF022985-3|AAB69970.1| 355|Caenorhabditis elegans Hypothetical
protein T15B7.11 protein.
Length = 355
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 260 VVLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDAN 141
+VL +VG CF I ++ +++ L K E ++ V N
Sbjct: 209 IVLVFVGICFKLIPCTLMLILSILLLQKMDEGKRSSVPIN 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,582,617
Number of Sequences: 27780
Number of extensions: 57032
Number of successful extensions: 315
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -