Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0885.Seq
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   0.72 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   6.7  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   8.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   8.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   8.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   8.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 0.72
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 228 VEARPHVREHHSSTPNFSEST 290
           + A PH    H++TP+   ST
Sbjct: 426 IHATPHHHHSHAATPHHQHST 446


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 212 ILGWIALFTLPKAYEMNKAQVDANLELAR 126
           I+G I L  +  AY+ ++ +    +ELAR
Sbjct: 834 IIGGIGLIIIEVAYKKHQIRKQKKMELAR 862


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 242 GACFNGITLIILGWI 198
           G  F  ITLI+LG I
Sbjct: 47  GLAFPSITLIVLGSI 61


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -1

Query: 149 DANLELARAKINEITAKVRAAVP 81
           D N  +  A +NE+    R   P
Sbjct: 397 DVNFRIMNANVNELILNTRCENP 419


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -1

Query: 218 LIILGWIALFTLPKA 174
           ++++ WIA +  P+A
Sbjct: 227 IVVMSWIAFWIKPEA 241


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -1

Query: 149 DANLELARAKINEITAKVRAAVP 81
           D N  +  A +NE+    R   P
Sbjct: 397 DVNFRIMNANVNELILNTRCENP 419


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -1

Query: 149 DANLELARAKINEITAKVRAAVP 81
           D N  +  A +NE+    R   P
Sbjct: 397 DVNFRIMNANVNELILNTRCENP 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,234
Number of Sequences: 438
Number of extensions: 675
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)