Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0883.Seq
         (399 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7SNV8 Cluster: Predicted protein; n=1; Nematostella ve...    33   2.7  
UniRef50_A0Y5W7 Cluster: Putative uncharacterized protein; n=1; ...    32   4.8  
UniRef50_Q4D789 Cluster: Putative uncharacterized protein; n=2; ...    31   6.3  

>UniRef50_A7SNV8 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 588

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 198 KVCPSLSRAV*SMSVKGTVNVYKYSVVLFYCFNMKLLLSNYN 73
           K CP LS  +      GTV ++  S++ FY F+ ++ +S+ N
Sbjct: 541 KFCPKLSHDLEMFKAVGTVKIHTSSILNFYSFSNQIQISSNN 582


>UniRef50_A0Y5W7 Cluster: Putative uncharacterized protein; n=1;
           Alteromonadales bacterium TW-7|Rep: Putative
           uncharacterized protein - Alteromonadales bacterium TW-7
          Length = 819

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 375 KELKXFXRYYIXQEFPXRNXPNTPHSAYHVARVQHIHTLRCVVFV 241
           KE+K   ++   Q        +T   +YH+ ++Q+I T RC+V+V
Sbjct: 660 KEIKACVKFVYDQYKLSEEYDSTKTDSYHLKKIQNIVTFRCMVWV 704


>UniRef50_Q4D789 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 412

 Score = 31.5 bits (68), Expect = 6.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 174 RERERGRLFMMRMQCDVTPRAYSQTLHSATCECVERE 284
           +  E+ RL   R+   V   AY Q LH A CE  ERE
Sbjct: 197 QREEQLRLLQERLAPKVVTDAYRQQLHEAKCELEERE 233


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 309,927,111
Number of Sequences: 1657284
Number of extensions: 4465228
Number of successful extensions: 7849
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7848
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)