Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0883.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0192 + 17755807-17755941,17756023-17756235,17758003-177580...    28   3.1  
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074...    27   5.5  

>06_03_0192 +
           17755807-17755941,17756023-17756235,17758003-17758086,
           17759280-17759948
          Length = 366

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 307 PPLRLPCSSRSTHSHVA 257
           PPLRLPCSS S+ S  A
Sbjct: 11  PPLRLPCSSSSSPSPAA 27


>10_07_0053 -
           12406958-12407011,12407012-12407168,12407280-12407410,
           12407592-12407727,12407953-12408224,12408604-12408893,
           12408984-12409285,12409359-12409424,12409506-12409571,
           12409855-12409926,12410013-12410084,12410207-12410281,
           12410367-12410438,12410531-12410663,12411556-12411655
          Length = 665

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 205 CACSATSRRALIHKHYTAQRVNVLNASY 288
           C CS T RR L+     A  V VLNA +
Sbjct: 14  CCCSWTQRRILVAATTDANDVTVLNALF 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,308,360
Number of Sequences: 37544
Number of extensions: 124248
Number of successful extensions: 235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)