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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0883.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  

>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2722

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 391  LIYPIQRIKVFXTILHXSRI 332
            +++P+QR K+F   LH SRI
Sbjct: 2371 VVFPVQREKLFHKSLHMSRI 2390


>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 385 YPIQRIKVFXTILHXSRISVXKXT*HPPLRLP-CSSRSTHSHVALCSVC 242
           +P+Q +    +  + + IS  K   H P++ P  SSR+  +H++ C  C
Sbjct: 438 HPVQTLPTSASA-NTAHISPCKHCPHQPVQTPPTSSRANTAHISQCKHC 485


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,960,156
Number of Sequences: 59808
Number of extensions: 155495
Number of successful extensions: 285
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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