Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0883.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.2  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 234 AYSQTLHSATCECVERELHGR 296
           A+ Q +HSA   CV     GR
Sbjct: 96  AFRQDVHSAAYRCVASNSVGR 116


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 234 AYSQTLHSATCECVERELHGR 296
           A+ Q +HSA   CV     GR
Sbjct: 96  AFRQDVHSAAYRCVASNSVGR 116


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 388 IYPIQRIKVFXTILHXSR 335
           + PI+R+K+   + H S+
Sbjct: 28  VAPIERVKLLLQVQHISK 45


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 388 IYPIQRIKVFXTILHXSR 335
           + PI+R+K+   + H S+
Sbjct: 28  VAPIERVKLLLQVQHISK 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,020
Number of Sequences: 438
Number of extensions: 1562
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)