Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0883.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28520.2 68417.m04079 12S seed storage protein, putative / cr...    27   4.6  
At1g18730.1 68414.m02336 expressed protein                             27   4.6  

>At4g28520.2 68417.m04079 12S seed storage protein, putative /
           cruciferin, putative strong similarity to SP|P33525
           Cruciferin CRU1 precursor (11S globulin) (12S storage
           protein) from Brassica napus; contains Pfam profile
           PF00190 Cupin and Prosite 11-S plant seed storage
           proteins signature PS00305 isoform contains
           non-consensus AC acceptor splice site at intron 3
          Length = 394

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 226 VTSHCMRIMKSLPLSLSRGLVYECEGDS 143
           V S+ + I++ + LS +RG++ EC+G S
Sbjct: 367 VNSYTLPILEYVRLSATRGVLQECDGAS 394


>At1g18730.1 68414.m02336 expressed protein
          Length = 175

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 3   KKHVWHSGTAAVKLLHTFFI 62
           +KHVWH    A+K ++ F+I
Sbjct: 81  EKHVWHLSDKAIKNVYMFYI 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,733,591
Number of Sequences: 28952
Number of extensions: 99952
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)