Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0881.Seq
         (329 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    87   9e-17
UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep: ...    31   3.7  
UniRef50_Q7RCG7 Cluster: Putative uncharacterized protein PY0581...    31   4.9  
UniRef50_Q7VH92 Cluster: ABC-transporter ATP-binding protein; n=...    30   8.5  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 86.6 bits (205), Expect = 9e-17
 Identities = 36/39 (92%), Positives = 38/39 (97%)
 Frame = -3

Query: 261  QEYHSGVNRLLHKPGQGKICLCFENIFDIPYHLRKNIGV 145
            + +HSGVNRLLHKPGQGKICLCFENIFDIPYHLRKNIGV
Sbjct: 1148 RSHHSGVNRLLHKPGQGKICLCFENIFDIPYHLRKNIGV 1186


>UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep:
           ORF131 - Helicoverpa zea SNPV
          Length = 192

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 100 LKHYKEYSKSCLVVLNTDILTEMVRNIEYVFE 195
           L H +  +K  +V LN D + E V+NI++VFE
Sbjct: 149 LNHLRSINKQKIVFLNGDHVEEYVQNIKHVFE 180


>UniRef50_Q7RCG7 Cluster: Putative uncharacterized protein PY05815;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05815 - Plasmodium yoelii yoelii
          Length = 1012

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 13  RGFLCMLIKVKQRESYR*NRSKSLSKI*NLKHYKEYSKSCLVVLNTD-ILTEMVRNIEYV 189
           +GF   ++  +    Y    ++ LSK  NLK+ K+Y    L++LN D  + E V++  Y 
Sbjct: 458 KGFDVSIVSAQDYMKYSGYDNELLSKYYNLKNEKDY--IFLIILNKDFFIDEFVKSQNYS 515

Query: 190 FEAKAYF 210
              + YF
Sbjct: 516 ISKQNYF 522


>UniRef50_Q7VH92 Cluster: ABC-transporter ATP-binding protein; n=12;
           Proteobacteria|Rep: ABC-transporter ATP-binding protein
           - Helicobacter hepaticus
          Length = 240

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 234 LLHKPGQGKICLCFENIFDIPYHLRKNIGV*Y 139
           LLH P  GK+ L   +I  +P H R N+G+ Y
Sbjct: 52  LLH-PSSGKVMLNHTDITKLPLHQRSNLGIGY 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 304,487,830
Number of Sequences: 1657284
Number of extensions: 5530461
Number of successful extensions: 10758
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10757
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 9961543501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)