BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0881.Seq (329 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 1.3 SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 26 1.7 SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 3.0 SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 25 3.0 SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 3.9 SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 24 6.8 SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 24 6.8 SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb... 23 9.0 SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 23 9.0 >SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pombe|chr 2|||Manual Length = 329 Score = 26.2 bits (55), Expect = 1.3 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -2 Query: 154 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 53 +RC T SIPC++ + ND+N NF Sbjct: 85 FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118 >SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces pombe|chr 3|||Manual Length = 563 Score = 25.8 bits (54), Expect = 1.7 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Frame = +3 Query: 204 IFFLDQACVKV---CSRLN----DTPGNTRRSGGSXDVLNRRG 311 IF+LD CV++ C L ++PG G DVLN+ G Sbjct: 356 IFYLDDECVRLLAGCRNLVSLKIESPGGIINDGSILDVLNQIG 398 >SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 268 Score = 25.0 bits (52), Expect = 3.0 Identities = 9/28 (32%), Positives = 14/28 (50%) Frame = -2 Query: 244 REQTFTQAWSRKNMPLLRKHIRYSLPSP 161 R + +AW P L H +Y +P+P Sbjct: 118 RRFIYQKAWKSYENPSLSSHRQYQIPTP 145 >SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 437 Score = 25.0 bits (52), Expect = 3.0 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = -1 Query: 230 YTSLVKEKYAFASKTYSIFLTISVRISVFNTTKHDLEY 117 YT L ++ +K Y I+LT + RIS+ ++ Y Sbjct: 389 YTGLNPQQVDVLAKQYHIYLTKNGRISISGLNTSNVRY 426 >SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 878 Score = 24.6 bits (51), Expect = 3.9 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 177 YRICFRSKGIFFLD-QACVKVCSRLNDTPG 263 YR+C++ KGI + D Q + V S +++ G Sbjct: 644 YRLCWKDKGILYQDSQIQIGVRSEYHNSEG 673 >SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 23.8 bits (49), Expect = 6.8 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -3 Query: 309 LGGSRHRRFLHFV*CFQE 256 L SRHR +HFV F++ Sbjct: 62 LSRSRHRNIIHFVESFED 79 >SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces pombe|chr 3|||Manual Length = 1526 Score = 23.8 bits (49), Expect = 6.8 Identities = 8/23 (34%), Positives = 16/23 (69%) Frame = -2 Query: 241 EQTFTQAWSRKNMPLLRKHIRYS 173 E FT+AW ++++P + +RY+ Sbjct: 33 ETAFTKAWIKEDLPDKKYVVRYN 55 >SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pombe|chr 3|||Manual Length = 380 Score = 23.4 bits (48), Expect = 9.0 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = -2 Query: 286 LPPLRLVFPGVS-FRREQTFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQL 134 + P+ G++ F R + WS + + + Y P+ +Y C +QL Sbjct: 25 IQPVTASVQGINPFHRLEADDFKWSTPSSSHVETQVFYIKPNEGDYMCFVQL 76 >SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 617 Score = 23.4 bits (48), Expect = 9.0 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = +3 Query: 165 DGKEYRICFRSKGIFFLDQACVK 233 DG+ + F S G ++LD +C K Sbjct: 292 DGQSFEDLFHSGGTWWLDVSCPK 314 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,314,692 Number of Sequences: 5004 Number of extensions: 25144 Number of successful extensions: 50 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 50 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 91899990 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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