Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0881.Seq
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   1.3  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   1.7  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   3.0  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    25   3.0  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   3.9  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    24   6.8  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    24   6.8  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    23   9.0  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    23   9.0  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 154 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 53
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
 Frame = +3

Query: 204 IFFLDQACVKV---CSRLN----DTPGNTRRSGGSXDVLNRRG 311
           IF+LD  CV++   C  L     ++PG     G   DVLN+ G
Sbjct: 356 IFYLDDECVRLLAGCRNLVSLKIESPGGIINDGSILDVLNQIG 398


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 244 REQTFTQAWSRKNMPLLRKHIRYSLPSP 161
           R   + +AW     P L  H +Y +P+P
Sbjct: 118 RRFIYQKAWKSYENPSLSSHRQYQIPTP 145


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 230 YTSLVKEKYAFASKTYSIFLTISVRISVFNTTKHDLEY 117
           YT L  ++    +K Y I+LT + RIS+      ++ Y
Sbjct: 389 YTGLNPQQVDVLAKQYHIYLTKNGRISISGLNTSNVRY 426


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 177 YRICFRSKGIFFLD-QACVKVCSRLNDTPG 263
           YR+C++ KGI + D Q  + V S  +++ G
Sbjct: 644 YRLCWKDKGILYQDSQIQIGVRSEYHNSEG 673


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 309 LGGSRHRRFLHFV*CFQE 256
           L  SRHR  +HFV  F++
Sbjct: 62  LSRSRHRNIIHFVESFED 79


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 241 EQTFTQAWSRKNMPLLRKHIRYS 173
           E  FT+AW ++++P  +  +RY+
Sbjct: 33  ETAFTKAWIKEDLPDKKYVVRYN 55


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -2

Query: 286 LPPLRLVFPGVS-FRREQTFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQL 134
           + P+     G++ F R +     WS  +   +   + Y  P+  +Y C +QL
Sbjct: 25  IQPVTASVQGINPFHRLEADDFKWSTPSSSHVETQVFYIKPNEGDYMCFVQL 76


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 165 DGKEYRICFRSKGIFFLDQACVK 233
           DG+ +   F S G ++LD +C K
Sbjct: 292 DGQSFEDLFHSGGTWWLDVSCPK 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,692
Number of Sequences: 5004
Number of extensions: 25144
Number of successful extensions: 50
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)