BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0881.Seq (329 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533... 27 3.6 >01_06_1089 - 34451982-34452670,34452755-34452814,34453287-34453352, 34454055-34454253,34454470-34454719,34454830-34454898, 34455733-34455804,34456027-34456168,34456544-34457064, 34457166-34457739,34459164-34459269 Length = 915 Score = 27.1 bits (57), Expect = 3.6 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +1 Query: 139 VLNTDILTEMVRNIEYVFEAKAYFSLTR 222 +++TD LT +++Y+ E K Y+S TR Sbjct: 388 LVHTDNLTTSPDDVDYMKEVKKYYSYTR 415 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,049,252 Number of Sequences: 37544 Number of extensions: 147725 Number of successful extensions: 255 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 255 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 255 length of database: 14,793,348 effective HSP length: 72 effective length of database: 12,090,180 effective search space used: 447336660 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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