Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0881.Seq
(329 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_2986| Best HMM Match : Tis11B_C (HMM E-Value=6.6) 28 1.6
SB_52642| Best HMM Match : DUF1621 (HMM E-Value=4.5) 28 2.1
SB_23417| Best HMM Match : Phycoerythr_ab (HMM E-Value=0.49) 28 2.1
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 27 2.8
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07) 27 2.8
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 27 3.7
SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2) 26 6.5
SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_33729| Best HMM Match : SAM_1 (HMM E-Value=0.00081) 26 8.5
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 26 8.5
SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
>SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 234 LLHKPGQGKICLCFENIFDIPYHLR 160
LL P GKI CF NI P H++
Sbjct: 279 LLESPSFGKIIECFRNILASPGHIK 303
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 256 VSFRREQTFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 104
+S + ++++ W ++ + H+ + P RC I+LN WS PC V
Sbjct: 735 LSHQSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_2986| Best HMM Match : Tis11B_C (HMM E-Value=6.6)
Length = 308
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 221 LVKEKYAFASKTYSIFLTISVRISVFNTTKHDLEYS 114
LVKE+Y + +K ++ I + N KH+L+YS
Sbjct: 56 LVKEEYEYTNKIVTLGTNICDFNNTSNLKKHELDYS 91
>SB_52642| Best HMM Match : DUF1621 (HMM E-Value=4.5)
Length = 177
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = -2
Query: 268 VFPGVSFRREQTFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV*DFKS 89
V+ GV ++ E+ + RK + + Y +P+P C +++ W I +K
Sbjct: 88 VYNGVLYKGERVIVPSSLRKTLGIDHNMATYQIPAPEGMNCNGDVSSNWKIFREA--YKD 145
Query: 88 YLMTS 74
YL+ +
Sbjct: 146 YLIAT 150
>SB_23417| Best HMM Match : Phycoerythr_ab (HMM E-Value=0.49)
Length = 403
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = -2
Query: 268 VFPGVSFRREQTFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV*DFKS 89
V+ GV ++ E+ + RK + + Y +P+P C +++ W I +K
Sbjct: 314 VYNGVLYKGERVIVPSSLRKTLGIDHNMATYQIPAPEGMNCNGDVSSNWKIFREA--YKD 371
Query: 88 YLMTS 74
YL+ +
Sbjct: 372 YLIAT 376
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 111 QGILQVVFSCIKHRYSYGDGKEYRICFRSKGIFFLDQACVK 233
Q I + F+CIKH + D + +C R F+ C +
Sbjct: 236 QAIRRYSFTCIKHSFQLSDDRFSELCTRQVIADFVPIGCYR 276
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 250 FRREQTFTQAW--SRKNMPLLRKHIRYSLPSP*EY 152
FRR Q++ S + PL RKH R SLP P ++
Sbjct: 1313 FRRRHASQQSFDSSTHSHPLSRKHHRVSLPPPGQF 1347
>SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)
Length = 732
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 67 NRSKSLSKI*NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFSLTR 222
NRS +LS K Y S++ + L T RN+ FE K Y + +R
Sbjct: 432 NRSCNLSIDLKTKKYMNRSRNLSIELETKKNMNQSRNLSIDFETKKYMNRSR 483
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 67 NRSKSLSKI*NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFSLTR 222
NRS++LS K Y S++ + L T RN+ E K Y + +R
Sbjct: 480 NRSRNLSIDLETKKYMNRSRNLSIDLETKKYMNRSRNLSIDLETKKYMNRSR 531
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -2
Query: 283 PPLRLVFPGVSFRREQTFTQAWSRKNMPLLRKHIRYSLPSP*EYRCLIQLNTT 125
PPL + S Q F Q R N P+L+ + Y +P +++ N T
Sbjct: 389 PPLNVTVLAASSTSVQAFWQRPDRINGPILKYIVTYRIPGVGHAPIVVESNQT 441
>SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
Length = 958
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 261 QEYHSGVNRLLHKPGQGKICLCFENIFDIPYH 166
Q++H +N P G +C C E D+ H
Sbjct: 115 QKHHHTLNHGCSDPAFGSVCRCAEKETDVDVH 146
>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 206 YAFASKTYSIFLTISVRISVFNTTKHDLEYSL 111
YA+ +++ FLT VFN+T DL+ L
Sbjct: 204 YAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHL 235
>SB_33729| Best HMM Match : SAM_1 (HMM E-Value=0.00081)
Length = 196
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 171 KEYRICFRSKGIFFLDQACVKVC 239
KE+ +CF +K ++ DQ K+C
Sbjct: 142 KEWTLCFEAKEMYLEDQNKAKLC 164
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 239 TDFYT-SLVKEKYAFASKTYSIFLTISVRISVFNTTKHDL 123
+DF T S + + +S + S+FLT S +SVF T+ L
Sbjct: 545 SDFLTLSSLLSDFLTSSSSLSVFLTSSSSLSVFLTSSSSL 584
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 239 TDFYT-SLVKEKYAFASKTYSIFLTISVRISVFNTTKHDL 123
+DF T S + + +S + S+FLT S +SVF T+ L
Sbjct: 790 SDFLTLSSLLSDFLTSSSSLSVFLTSSSSLSVFLTSSSSL 829
>SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 230 YTSLVKEKYAFASKTYSIFLTISVRISVFNTTKHDLEY 117
+T + ++ K +SI+LT RISV T +EY
Sbjct: 140 FTGMKPDQVERLIKEFSIYLTKDGRISVAGVTSGSVEY 177
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,536,477
Number of Sequences: 59808
Number of extensions: 178674
Number of successful extensions: 362
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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