Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0881.Seq
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    29   0.60 
U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical p...    27   3.2  
Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AF036706-7|AAK39282.1|  562|Caenorhabditis elegans Hypothetical ...    26   7.3  
AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    25   9.7  

>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
           related protein 2 protein.
          Length = 1335

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 148 TDILTEMVRNIEYVFEAKAYFSLTRLV*KSVHA*MILLETLDEVEEAXMS 297
           +D  T + R + + FEA  Y  + RL+   +HA   L E +DEV +  +S
Sbjct: 702 SDSATGLSRKLTWQFEANLYLDVARLMLSMLHA-WCLDEDMDEVCDKRLS 750


>U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical
           protein C37C3.11 protein.
          Length = 161

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 108 LQGILQVVFSCIKHRYSYGDGKEYRICFRSKGIFFLDQACVK 233
           L G+L V    ++  +S  +G +Y ICF   G+    Q  VK
Sbjct: 104 LFGVLYVPLFFLQTSHSLMEGLDYFICFSLSGVLLFLQWAVK 145


>Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical
           protein T03E6.3 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 127 TWSIPCSV*DFKSYLMTSNDFND 59
           TW+I C+V ++K + +T N+ N+
Sbjct: 99  TWNIHCAVFNWKQFEVTRNEVNN 121


>Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical
           protein C35C5.5 protein.
          Length = 531

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 21/57 (36%), Positives = 24/57 (42%)
 Frame = +3

Query: 90  DLKS*TLQGILQVVFSCIKHRYSYGDGKEYRICFRSKGIFFLDQACVKVCSRLNDTP 260
           DL S T     Q+   C   +Y Y D K YRI  R K IFF     +      N TP
Sbjct: 224 DLLSATSSRYAQIYPGCCGQQY-YIDIK-YRIIIRRKAIFFTVTLTIPCMLIANVTP 278


>AF036706-7|AAK39282.1|  562|Caenorhabditis elegans Hypothetical
           protein T07A9.10 protein.
          Length = 562

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 189 FRSKGIFFLDQACVKVCSRLNDTP 260
           +RS  IFFLD  C ++  +L+ +P
Sbjct: 104 YRSAHIFFLDPCCDELFEKLSKSP 127


>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 200 FASKTYSIFLTISVRISVFNTTKHDLEYSL*CLRF*ILLND 78
           F+S  +SIF ++S+ ISVF       + S+  + F  +++D
Sbjct: 12  FSSSIFSIFSSVSIFISVFKLAFISRKSSIYVIAFFNIISD 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,159,157
Number of Sequences: 27780
Number of extensions: 138400
Number of successful extensions: 291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)